Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120568.Seq
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.79 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.2  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   5.6  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   5.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = +1

Query: 76  GSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVP----GFCA*HGFHQFSRHSRQH 243
           G P G    Q PSQ    P SG  Q   +  QQ  L P     F   H  +   +  +QH
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQMQQL-LQQHILSPTQLQSFMQQHSLY-LQQQQQQH 106

Query: 244 HPPSA 258
           H  S+
Sbjct: 107 HQDSS 111



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 621 GSPSGNRHPQFPSQASTLPISGKFQAHDINNQ 716
           G P G    Q PSQ    P SG  Q   +  Q
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQMQQLLQQ 80



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 433 GSPSGNRHQQFPSQASTLPISGKFQV 510
           G P G    Q PSQ    P SG  Q+
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQM 74


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -2

Query: 638 VSTRGAVMASRWMVLTRVSTKLVKAMLSAEARDKLTLLVVYVMTWNLPDMGKVEACDGN 462
           V   G    +   VL R S  +V     A+  + L ++V   +  NLP  G++   +GN
Sbjct: 325 VGNSGIACVNEHQVLQRESFDVV-----AQNEETLQMIVSMKIMENLPQSGRINDPEGN 378


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 741 RSQGQADFVGCLCHELGIYLIWVK 670
           ++ G  + VGC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92



 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 196 RSQGQADFVGCLCHELGIYLIWVK 125
           ++ G  + VGC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 252 ERHNG-SPSGNRHQQFPSQASTLP 320
           ++HN  SP+G+  Q   S AST P
Sbjct: 57  QQHNSPSPTGSSPQHSGSSASTSP 80



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 64  RRHNG-SPSGNRHQQFPSQASTLP 132
           ++HN  SP+G+  Q   S AST P
Sbjct: 57  QQHNSPSPTGSSPQHSGSSASTSP 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,602
Number of Sequences: 438
Number of extensions: 4185
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)