Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120568.Seq
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   2.6  
At5g26570.1 68418.m03152 glycoside hydrolase starch-binding doma...    28   6.0  
At1g07650.1 68414.m00821 leucine-rich repeat transmembrane prote...    28   6.0  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 580 VDTLVNTIHRDAITAPLVETAIRNFRHKLQLYPYQVNSKLMT 705
           + ++VN I +DA  A L +  ++N    L+L PY   +K M+
Sbjct: 304 IQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMS 345


>At5g26570.1 68418.m03152 glycoside hydrolase starch-binding
           domain-containing protein similar to SEX1 (starch
           excess) [Arabidopsis thaliana] GI:12044358; contains
           Pfam profile PF00686: Starch binding domain
          Length = 1191

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 417 WMVLARVSTKLVKAMLEE*GIKILHELGIYLIWVKLKLVTEIADGGFH*GSRY 259
           W  L  V   +V ++  E  +K L    IYL W+    +    DGG H  +R+
Sbjct: 263 WRKLEMVREVIVGSVEREERLKALIYSAIYLKWINTGQIPCFEDGGHHRPNRH 315


>At1g07650.1 68414.m00821 leucine-rich repeat transmembrane protein
           kinase, putative similar to GB:AAC50043 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 37 (4), 587-596
           (1998))
          Length = 1014

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 462 ISVTSFNFTHIR*IPSHDINNQQSQLVPGFCA*HGFHQ 575
           + V+  NFT    IPSHD N   S LV  F   +  H+
Sbjct: 356 VDVSFNNFTDESSIPSHDCNRVTSNLVESFALGNKSHK 393


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,694,484
Number of Sequences: 28952
Number of extensions: 349640
Number of successful extensions: 894
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)