Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120567.Seq
         (799 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    28   0.075
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    24   1.6  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   6.5  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   6.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   6.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.6  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.6  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 0.075
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 521 HPFSLKIAHNGTLRHSSNRHHISNFKSCFLST 426
           HP SL   H   L H+   HH+    S F S+
Sbjct: 335 HPLSLSSDHQAMLHHNPMSHHLKQEPSGFTSS 366


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 131 KSN*LNVGLSFSL-YISYPVIKFKDCLF*FNKIF 33
           K N    G+  +L ++ + +I+ K+C+  FN+IF
Sbjct: 122 KINVQQSGIFINLPFLEHNLIRLKNCVIYFNRIF 155


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -1

Query: 400 FGSNEELLPCLELVWIAEVYNSQRCT-STRVMDY 302
           FG+   L    +L+W  EV N  R      + DY
Sbjct: 180 FGARHGLETLNQLIWFDEVVNELRILHGVEIRDY 213


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 325 CTFGCCTLPRSIQVQDKEGALHCSRSSTQANLFI 426
           C+ GC +L R   + DK      +  STQA  ++
Sbjct: 226 CSPGCFSLFRGKALMDKSVMKKYTTRSTQAKHYV 259


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 325 CTFGCCTLPRSIQVQDKEGALHCSRSSTQANLFI 426
           C+ GC +L R   + DK      +  STQA  ++
Sbjct: 540 CSPGCFSLFRGKALMDKSVMKKYTTRSTQAKHYV 573


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 325 CTFGCCTLPRSIQVQDKEGALHCSRSSTQANLFI 426
           C+ GC +L R   + DK      +  STQA  ++
Sbjct: 773 CSPGCFSLFRGKALMDKSVMKKYTTRSTQAKHYV 806


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 325 CTFGCCTLPRSIQVQDKEGALHCSRSSTQANLFI 426
           C+ GC +L R   + DK      +  STQA  ++
Sbjct: 773 CSPGCFSLFRGKALMDKSVMKKYTTRSTQAKHYV 806


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +1

Query: 547  WKLRHCDWTQS 579
            W   HCDW ++
Sbjct: 2271 WNKDHCDWPEN 2281


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 627 TFLAPDGSFTLVR 589
           T   PDG FT++R
Sbjct: 579 TVTVPDGGFTIIR 591


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 572 HNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRID 685
           H+P A  +   LP+GA   L  ++ G+V  +A G  ++
Sbjct: 35  HSPCATGSN-GLPAGAGSNLLCASNGLVTTLASGSSLN 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,903
Number of Sequences: 336
Number of extensions: 4729
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)