Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120567.Seq
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 200 2e-52
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 200 2e-52
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 200 2e-52
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 30 0.44
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 28 1.8
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.1
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3... 26 7.2
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 9.5
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 25 9.5
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 200 bits (488), Expect = 2e-52
Identities = 98/171 (57%), Positives = 120/171 (70%), Gaps = 1/171 (0%)
Frame = +2
Query: 254 LDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHR-PICLLW 430
LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A E ++
Sbjct: 31 LDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCG 90
Query: 431 KESNS*SWKCDACWSYA*GYHCVQS*EKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 610
K + G EK GDRG L R+SGN+ ++GH+ D +TRVKLP
Sbjct: 91 KNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLP 150
Query: 611 SGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVQRNCWPYVRGV 763
SGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+V+RNCWP RGV
Sbjct: 151 SGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGV 201
Score = 83.8 bits (198), Expect = 3e-17
Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Frame = +3
Query: 162 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRS*ITLNVMDTSRELLRI*SMTLVEVHLWLL 341
MGRVIRAQRK +G +F +HT+ RKGA +LR TL+ + + + + +
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLR---TLDFAERHGYIRGVVQKIIHDPGRGAP 56
Query: 342 YTSAIHTSSRQGRSSS----LLPKLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLE 509
+ R+ +YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+E
Sbjct: 57 LAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVE 116
Query: 510 RK 515
K
Sbjct: 117 EK 118
Score = 31.9 bits (69), Expect = 0.11
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 763 AMNPVEHPHGGG 798
AMNPV+HPHGGG
Sbjct: 202 AMNPVDHPHGGG 213
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 200 bits (488), Expect = 2e-52
Identities = 98/171 (57%), Positives = 120/171 (70%), Gaps = 1/171 (0%)
Frame = +2
Query: 254 LDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHR-PICLLW 430
LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A E ++
Sbjct: 31 LDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCG 90
Query: 431 KESNS*SWKCDACWSYA*GYHCVQS*EKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 610
K + G EK GDRG L R+SGN+ ++GH+ D +TRVKLP
Sbjct: 91 KNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLP 150
Query: 611 SGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVQRNCWPYVRGV 763
SGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+V+RNCWP RGV
Sbjct: 151 SGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGV 201
Score = 83.8 bits (198), Expect = 3e-17
Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Frame = +3
Query: 162 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRS*ITLNVMDTSRELLRI*SMTLVEVHLWLL 341
MGRVIRAQRK +G +F +HT+ RKGA +LR TL+ + + + + +
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLR---TLDFAERHGYIRGVVQKIIHDPGRGAP 56
Query: 342 YTSAIHTSSRQGRSSS----LLPKLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLE 509
+ R+ +YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+E
Sbjct: 57 LAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVE 116
Query: 510 RK 515
K
Sbjct: 117 EK 118
Score = 31.9 bits (69), Expect = 0.11
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 763 AMNPVEHPHGGG 798
AMNPV+HPHGGG
Sbjct: 202 AMNPVDHPHGGG 213
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 200 bits (488), Expect = 2e-52
Identities = 98/171 (57%), Positives = 120/171 (70%), Gaps = 1/171 (0%)
Frame = +2
Query: 254 LDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHR-PICLLW 430
LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A E ++
Sbjct: 31 LDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCG 90
Query: 431 KESNS*SWKCDACWSYA*GYHCVQS*EKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 610
K + G EK GDRG L R+SGN+ ++GH+ D +TRVKLP
Sbjct: 91 KNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLP 150
Query: 611 SGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVQRNCWPYVRGV 763
SGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+V+RNCWP RGV
Sbjct: 151 SGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGV 201
Score = 83.8 bits (198), Expect = 3e-17
Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Frame = +3
Query: 162 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRS*ITLNVMDTSRELLRI*SMTLVEVHLWLL 341
MGRVIRAQRK +G +F +HT+ RKGA +LR TL+ + + + + +
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLR---TLDFAERHGYIRGVVQKIIHDPGRGAP 56
Query: 342 YTSAIHTSSRQGRSSS----LLPKLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLE 509
+ R+ +YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+E
Sbjct: 57 LAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVE 116
Query: 510 RK 515
K
Sbjct: 117 EK 118
Score = 31.9 bits (69), Expect = 0.11
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 763 AMNPVEHPHGGG 798
AMNPV+HPHGGG
Sbjct: 202 AMNPVDHPHGGG 213
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 29.9 bits (64), Expect = 0.44
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 763 AMNPVEHPHGGG 798
AMNP +HPHGGG
Sbjct: 262 AMNPCDHPHGGG 273
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/63 (26%), Positives = 35/63 (55%)
Frame = +2
Query: 524 RGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKA 703
+ +L R++G+ A +I D K V+L SG ++ + ++ +G+V+ + + KA
Sbjct: 189 KAKLCRSAGSSARIIAF--DGKYAIVRLQSGEERKILDTSFATIGVVSNIYWQHRQLGKA 246
Query: 704 GRA 712
GR+
Sbjct: 247 GRS 249
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -2
Query: 669 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSP 517
PAT+P F P F +L SGL V+ +P+ + +P
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNP 296
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 4.1
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +3
Query: 342 YTSAIHTSSRQGRSSSLLPKLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLERKW 518
YTS T + Q +SL+P+ YT Y G KA + + + VG++ IV + R W
Sbjct: 137 YTSLASTIAAQSGIASLVPQTYT---PYGGVKALIGILVGVVVGSVFLLAIVMVIARIW 192
>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 393 LPKLYTGQFVYCGKKATLEVGNVMPVGAM-PEGTIVCNLERKWVIEVVWHVPLE 551
L K+ Q +Y G+K + + N + + P G + + ++KW I VV H L+
Sbjct: 75 LKKIREFQNIY-GEKNVILLSNSIGTRKLDPTGELAAHFQQKWNIPVVRHSKLK 127
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 758 HVHMASSYVGPCTCGMP 708
HV +++SY G C CG P
Sbjct: 138 HVSISTSYSGICDCGDP 154
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 680 IDKPILKAGRAYHKYKVQRNCWPYVRG 760
++KPI K+K + +CW +RG
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRG 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,536,528
Number of Sequences: 5004
Number of extensions: 75698
Number of successful extensions: 209
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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