Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120567.Seq
         (799 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             231   4e-61
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       134   6e-32
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   31   1.1  
SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)         30   1.9  
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    30   1.9  
SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)          30   1.9  
SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)         30   1.9  
SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)                       30   1.9  
SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)          30   1.9  
SB_49303| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0037)          29   4.4  
SB_31279| Best HMM Match : PI3K_C2 (HMM E-Value=0.76)                  29   4.4  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.4  
SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036)         29   5.8  
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  231 bits (566), Expect = 4e-61
 Identities = 114/170 (67%), Positives = 128/170 (75%), Gaps = 1/170 (0%)
 Frame = +2

Query: 257 DYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHR-PICLLWK 433
           DYAERHGYIKGVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A E ++        K
Sbjct: 33  DYAERHGYIKGVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGK 92

Query: 434 ESNS*SWKCDACWSYA*GYHCVQS*EKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPS 613
           ++      C        G       EK GDRGRLAR SGN+ATVI HN + KRTRVKLPS
Sbjct: 93  KAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPS 152

Query: 614 GAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVQRNCWPYVRGV 763
           G KKV+PSSNR +VGIVAGGGRIDKP+LKAGRAYHKYK +RNCWP VRGV
Sbjct: 153 GIKKVIPSSNRALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGV 202



 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 54/125 (43%), Positives = 70/125 (56%), Gaps = 7/125 (5%)
 Frame = +3

Query: 162 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRS*ITLNVMDTSRELLRI*SMTLVEVH---- 329
           MGRVIR QRKGAGS+F SHTK RKGA  LR      V D +     I  +    +H    
Sbjct: 1   MGRVIRGQRKGAGSIFTSHTKHRKGAANLR------VHDYAERHGYIKGVVKEIIHDPGR 54

Query: 330 ---LWLLYTSAIHTSSRQGRSSSLLPKLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVC 500
              L ++     +    +         +YTGQF+YCGKKA L++GN +PVG MPEGTI+ 
Sbjct: 55  GAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIIS 114

Query: 501 NLERK 515
           ++E K
Sbjct: 115 SVEEK 119



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 763 AMNPVEHPHGGG 798
           AMNPVEHPHGGG
Sbjct: 203 AMNPVEHPHGGG 214


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  134 bits (325), Expect = 6e-32
 Identities = 71/123 (57%), Positives = 83/123 (67%), Gaps = 1/123 (0%)
 Frame = +2

Query: 287 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHR-PICLLWKESNS*SWKCD 463
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A E ++        K++      C 
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCL 60

Query: 464 ACWSYA*GYHCVQS*EKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSN 643
                  G       EK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSN
Sbjct: 61  PVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSN 120

Query: 644 RGM 652
           R +
Sbjct: 121 RAL 123



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 25/38 (65%), Positives = 33/38 (86%)
 Frame = +3

Query: 402 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLERK 515
           +YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++E K
Sbjct: 40  MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEK 77


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -2

Query: 672 PPATIPTMPLLLDGRTFLAPDGSFT 598
           P AT   + L+LD  TFL PDGS T
Sbjct: 135 PAATTTYLNLILDSETFLEPDGSAT 159


>SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)
          Length = 275

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/42 (47%), Positives = 24/42 (57%)
 Frame = -1

Query: 736 TLDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 611
           TLDL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/64 (35%), Positives = 33/64 (51%)
 Frame = +2

Query: 518 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 697
           G   +LARA+G  A +I    +     V+LPS  +K + S     VG V+   R ++ I 
Sbjct: 137 GKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVEKEVSSKCLASVGRVSNIERKNRVIG 194

Query: 698 KAGR 709
           KAGR
Sbjct: 195 KAGR 198


>SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)
          Length = 321

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/42 (47%), Positives = 24/42 (57%)
 Frame = -1

Query: 736 TLDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 611
           TLDL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 144 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 181


>SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)
          Length = 249

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/42 (47%), Positives = 24/42 (57%)
 Frame = -1

Query: 736 TLDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 611
           TLDL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229


>SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 801

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/42 (47%), Positives = 24/42 (57%)
 Frame = -1

Query: 736 TLDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 611
           TLDL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 86  TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 123


>SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)
          Length = 273

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/42 (47%), Positives = 24/42 (57%)
 Frame = -1

Query: 736 TLDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 611
           TLDL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229


>SB_49303| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0037)
          Length = 722

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/42 (47%), Positives = 23/42 (54%)
 Frame = -1

Query: 736 TLDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 611
           TLDL+L   P    N  VNTST S  +DH +V    NL  SR
Sbjct: 545 TLDLLLTTYP----NVIVNTSTVSGFSDHLAVIFEVNLKPSR 582


>SB_31279| Best HMM Match : PI3K_C2 (HMM E-Value=0.76)
          Length = 275

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -1

Query: 634 WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSITHFLSRLHTMVPS-GIAPTGIT 458
           W  +LG       C L++ I +            TTS+T   ++ H  VP+ G+A  G T
Sbjct: 25  WDFILGLSSTHTKCRLAVGIYNGTDLISDVKVLPTTSVTQLTTQQHPSVPAGGVAVLGAT 84

Query: 457 FPTSRV 440
            P   V
Sbjct: 85  HPFPNV 90


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 533  LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 661
            +AR +G+F   T +    D  RTR   P   KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513


>SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036)
          Length = 618

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +1

Query: 271 SWIHQGSC*GYNP*PW*RCTFGCCTLPRSIQ---VQDKEGALHCSRSSTQANLFIVERK 438
           SW+H  S    +P  +    F C +LPR I    V+++  A    RSS  + L  + R+
Sbjct: 323 SWLHNLSSCTISPYLYSDHAFVCASLPRQISFRGVEERRSARRAERSSLSSELVRLNRE 381


>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1360

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -1

Query: 736 TLDLVLVVCPSSFQNRFVNTSTSSNNTDHASV 641
           TLDL+L   P    N  VNTST+S  +DH +V
Sbjct: 369 TLDLLLTTYP----NVIVNTSTASGLSDHLAV 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,938,784
Number of Sequences: 59808
Number of extensions: 598391
Number of successful extensions: 1359
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)