Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120567.Seq
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   212   2e-55
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    33   0.24 
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    33   0.24 
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in bl...    28   8.9  
U64859-8|AAC69096.1|  378|Caenorhabditis elegans Prion-like-(q/n...    28   8.9  
U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...    28   8.9  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  212 bits (518), Expect = 2e-55
 Identities = 102/171 (59%), Positives = 123/171 (71%), Gaps = 1/171 (0%)
 Frame = +2

Query: 254 LDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHRPICL-LW 430
           LDYAERHGYIKG+VKDIIHDPGRGAPLA++ FRDPYK+KT K   +A E +H    +   
Sbjct: 32  LDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVVAAEGMHTGQFIHCG 91

Query: 431 KESNS*SWKCDACWSYA*GYHCVQS*EKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 610
            ++           +   G        K GDRG +ARASGN+ATVI HNPD K+TR++LP
Sbjct: 92  AKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLP 151

Query: 611 SGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVQRNCWPYVRGV 763
           SGAKKV+ S NR M+G+VAGGGR DKP+LKAGR+YHKYK +RN WP VRGV
Sbjct: 152 SGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGV 202



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
 Frame = +3

Query: 162 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRS*ITLNVMDTSRELLR-I*SMTLVEVHLWL 338
           MGR IR QRKGAG +F SH K RKGA KLR           + L++ I         L +
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60

Query: 339 LYTSAIHTSSRQGRSSSLLPKLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLERK 515
           +     +       +      ++TGQF++CG KA +++GN++PVG +PEGT +CN+E K
Sbjct: 61  IAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENK 119



 Score = 33.1 bits (72), Expect = 0.24
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 763 AMNPVEHPHGGG 798
           AMNPVEHPHGGG
Sbjct: 203 AMNPVEHPHGGG 214


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 9/39 (23%), Positives = 27/39 (69%)
 Frame = -3

Query: 566 SQWRSFQRHVPDDLYHPFSLKIAHNGTLRHSSNRHHISN 450
           SQ+R++  H  D + +P+S+++ H   ++++ ++ H+++
Sbjct: 161 SQFRAYYDHTKDQMMYPYSIELTHAQNIQNALSQSHVTS 199


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 9/39 (23%), Positives = 27/39 (69%)
 Frame = -3

Query: 566 SQWRSFQRHVPDDLYHPFSLKIAHNGTLRHSSNRHHISN 450
           SQ+R++  H  D + +P+S+++ H   ++++ ++ H+++
Sbjct: 245 SQFRAYYDHTKDQMMYPYSIELTHAQNIQNALSQSHVTS 283


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 272 HGYIKGVVKDIIHDPGRGAPLAVVHFR 352
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 272 HGYIKGVVKDIIHDPGRGAPLAVVHFR 352
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 566 IGHNPDAKRTRVKLPSGAKKVL 631
           IGH  D +RTR  LP+G KKVL
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVL 77


>U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 9 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = -3

Query: 758 HVHMASSYVGPCTCGMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSWLQTV 606
           H   A      C+C    Q     CQ   +QQQ   C C   A+P   QTV
Sbjct: 26  HCGCAQPQQSQCSCQQVQQTQSCSCQSAPVQQQAPSCSC---AQPQQTQTV 73


>U64859-8|AAC69096.1|  378|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 57
           protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = -3

Query: 758 HVHMASSYVGPCTCGMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSWLQTV 606
           H   A      C+C    Q     CQ   +QQQ   C C   A+P   QTV
Sbjct: 26  HCGCAQPQQSQCSCQQVQQTQSCSCQSAPVQQQAPSCSC---AQPQQTQTV 73


>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 159 IMGRVIRAQRKGAGSVFVSHTKKRKGAPKLRS*ITLNVMDTSRELLR 299
           I GR+ R    G G +FV   K  KG P+LR  +   V+   R+  R
Sbjct: 45  IRGRLNRLPSAGVGDMFVCSVK--KGKPELRKKVLQGVVIRQRKQFR 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,714,941
Number of Sequences: 27780
Number of extensions: 434863
Number of successful extensions: 1090
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)