Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120567.Seq
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   4.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   4.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   4.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   4.3  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   5.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 515 FSLKIAHNGTLRHSSNRHHI 456
           F+L+I  NGT+ +   RH I
Sbjct: 164 FALRIYRNGTVNYLMRRHLI 183


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 515 FSLKIAHNGTLRHSSNRHHI 456
           F+L+I  NGT+ +   RH I
Sbjct: 164 FALRIYRNGTVNYLMRRHLI 183


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 515 FSLKIAHNGTLRHSSNRHHI 456
           F+L+I  NGT+ +   RH I
Sbjct: 215 FALRIYRNGTVNYLMRRHLI 234


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 515 FSLKIAHNGTLRHSSNRHHI 456
           F+L+I  NGT+ +   RH I
Sbjct: 164 FALRIYRNGTVNYLMRRHLI 183


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 772 GSWHTTYIWPAVTLDLV 722
           G  H TY+ PAVT+ L+
Sbjct: 253 GILHATYVIPAVTMMLL 269


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 566 IGHNPDAKRTRVKLPSGAKKVL 631
           IG+  + K+TR  LP+G +KVL
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVL 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,556
Number of Sequences: 438
Number of extensions: 5305
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)