Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120564.Seq
         (778 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24729 Cluster: GP16 protein; n=12; Nucleopolyhedroviru...   179   6e-44
UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6; Nucle...   126   5e-28
UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7; Nucle...    77   4e-13
UniRef50_Q461U1 Cluster: Orf125; n=2; Nucleopolyhedrovirus|Rep: ...    70   6e-11
UniRef50_A0EZ02 Cluster: Gp16; n=1; Ecotropis obliqua NPV|Rep: G...    67   4e-10
UniRef50_A1YJ03 Cluster: Gp16; n=5; Nucleopolyhedrovirus|Rep: Gp...    49   1e-04
UniRef50_Q91BA2 Cluster: Calyx protein; n=2; Nucleopolyhedroviru...    38   0.21 
UniRef50_Q8WQX0 Cluster: Serine proteinase inhibitor serpin-2; n...    37   0.49 
UniRef50_A5UN47 Cluster: Helicase, UvrD/REP family; n=1; Methano...    36   1.1  
UniRef50_UPI0000E47588 Cluster: PREDICTED: similar to centrosome...    34   3.4  
UniRef50_Q9FXH1 Cluster: F6F9.22 protein; n=4; core eudicotyledo...    34   3.4  
UniRef50_Q75AA9 Cluster: ADR009Wp; n=1; Eremothecium gossypii|Re...    34   4.6  
UniRef50_P36865 Cluster: Polyhedral envelope protein; n=2; Lyman...    33   6.0  
UniRef50_Q6XZ06 Cluster: YlbN; n=2; Spiroplasma|Rep: YlbN - Spir...    33   8.0  

>UniRef50_P24729 Cluster: GP16 protein; n=12;
           Nucleopolyhedrovirus|Rep: GP16 protein - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 106

 Score =  179 bits (436), Expect = 6e-44
 Identities = 86/97 (88%), Positives = 88/97 (90%)
 Frame = +3

Query: 6   MNFWATFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMM 185
           MNFWATFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMM
Sbjct: 1   MNFWATFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMM 60

Query: 186 LSNLQNNTIRTWDAVVKNGKKISISTKKLTCY*QKTG 296
           LSNLQNNTIRTWDAVVKNGKKIS   +K+     K G
Sbjct: 61  LSNLQNNTIRTWDAVVKNGKKISNLDEKINVLLTKNG 97


>UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6;
           Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 252

 Score =  126 bits (305), Expect = 5e-28
 Identities = 55/57 (96%), Positives = 57/57 (100%)
 Frame = +2

Query: 506 PSKHRKMINDAGGSCHNTVKYMVDIYGASVLILRTPCSFADQLLSTFIANNYLCYFY 676
           PSKHRKMINDAGGSCHNTVKYMVDIYGA+VL+LRTPCSFADQLLSTFIANNYLCYFY
Sbjct: 41  PSKHRKMINDAGGSCHNTVKYMVDIYGAAVLVLRTPCSFADQLLSTFIANNYLCYFY 97



 Score = 91.9 bits (218), Expect = 2e-17
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +3

Query: 387 MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIP 509
           MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIP
Sbjct: 1   MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIP 41


>UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7;
           Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
           Orgyia pseudotsugata multicapsid polyhedrosis virus
           (OpMNPV)
          Length = 297

 Score = 77.4 bits (182), Expect = 4e-13
 Identities = 42/66 (63%), Positives = 47/66 (71%), Gaps = 11/66 (16%)
 Frame = +2

Query: 506 PSKHRKMINDAGG------SC-----HNTVKYMVDIYGASVLILRTPCSFADQLLSTFIA 652
           PSKHRKMIND G       SC     ++TVKYMVDIYGA+VL LR P  F+DQLL+TF A
Sbjct: 41  PSKHRKMINDIGNPACNPPSCSFPPSNSTVKYMVDIYGAAVLALRCPSLFSDQLLTTFTA 100

Query: 653 NNYLCY 670
           NNYL Y
Sbjct: 101 NNYLSY 106



 Score = 77.0 bits (181), Expect = 5e-13
 Identities = 33/41 (80%), Positives = 35/41 (85%)
 Frame = +3

Query: 387 MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIP 509
           M P NNVMFDDASV+WID DYIYQN KMPL  FQQLLF+IP
Sbjct: 1   MTPNNNVMFDDASVMWIDADYIYQNSKMPLSTFQQLLFSIP 41


>UniRef50_Q461U1 Cluster: Orf125; n=2; Nucleopolyhedrovirus|Rep:
           Orf125 - Trichoplusia ni SNPV
          Length = 95

 Score = 70.1 bits (164), Expect = 6e-11
 Identities = 32/89 (35%), Positives = 53/89 (59%)
 Frame = +3

Query: 6   MNFWATFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMM 185
           MN+ A   + LV YL + G +++EL  IK +L  +YE+++  F  +V ++   + DT   
Sbjct: 1   MNYSAVTLVLLVAYLWHTGSISHELAAIKKLLTFIYEAIQDRFDAIVYDMAKFRNDTMFY 60

Query: 186 LSNLQNNTIRTWDAVVKNGKKISISTKKL 272
           L+ +QN T  T+D VV NG KI +  +K+
Sbjct: 61  LNRIQNTTKITYDLVVTNGNKIDVINQKI 89


>UniRef50_A0EZ02 Cluster: Gp16; n=1; Ecotropis obliqua NPV|Rep: Gp16
           - Ecotropis obliqua NPV
          Length = 98

 Score = 67.3 bits (157), Expect = 4e-10
 Identities = 31/89 (34%), Positives = 51/89 (57%)
 Frame = +3

Query: 6   MNFWATFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMM 185
           MN+ A   +    Y+   G L++E++ +K +LVVMY+ +E  FSN+ +EI  LK  TF +
Sbjct: 1   MNYSAICLVIFAAYMWQTGSLSHEIRAVKHLLVVMYDMIESKFSNLHNEISFLKNGTFRL 60

Query: 186 LSNLQNNTIRTWDAVVKNGKKISISTKKL 272
              LQN+T  +   ++ N  KI +   K+
Sbjct: 61  FEQLQNSTKHSIKLIMNNSNKIDVLNNKI 89


>UniRef50_A1YJ03 Cluster: Gp16; n=5; Nucleopolyhedrovirus|Rep: Gp16
           - Spodoptera frugiperda nuclear polyhedrosis virus
           (SfNPV)
          Length = 97

 Score = 49.2 bits (112), Expect = 1e-04
 Identities = 26/89 (29%), Positives = 41/89 (46%)
 Frame = +3

Query: 6   MNFWATFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMM 185
           MNF     + L  YL YA  + NE+  +K  L+++YE+    F +V   +          
Sbjct: 2   MNFSGAALVLLAAYLWYANSMANEINLVKKFLLLIYETTTTKFDDVTKLMSDYHETIVQN 61

Query: 186 LSNLQNNTIRTWDAVVKNGKKISISTKKL 272
           L  L N T  + D +V N +KI +   K+
Sbjct: 62  LEKLHNMTKHSIDLIVINSRKIDVINGKI 90


>UniRef50_Q91BA2 Cluster: Calyx protein; n=2;
           Nucleopolyhedrovirus|Rep: Calyx protein - Spodoptera
           litura multicapsid nucleopolyhedrovirus (SpltMNPV)
          Length = 344

 Score = 38.3 bits (85), Expect = 0.21
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 506 PSKHRKMIND--AGGSCH-NTVKYMVDIYGASVLILRTPCSFADQLLSTFIANNY 661
           P +HR+ + D     +C  +  K  VD+ G S+L  R+ C+  D LL+ F+A  Y
Sbjct: 49  PPRHRRCLGDFRCSHTCRFDNNKVFVDLLGLSILCSRSNCNICDYLLTAFVAEVY 103


>UniRef50_Q8WQX0 Cluster: Serine proteinase inhibitor serpin-2; n=4;
           Ixodidae|Rep: Serine proteinase inhibitor serpin-2 -
           Rhipicephalus appendiculatus (Brown ear tick)
          Length = 380

 Score = 37.1 bits (82), Expect = 0.49
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +3

Query: 12  FWATFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLS 191
           F++ FSI     +  AG  NN  ++I   L V  E + KHF++ +  +     D  + ++
Sbjct: 33  FYSPFSIAAALSMALAGARNNTAKQIADALHVNSEEVHKHFASFMSRLSGFAPDVKLHVA 92

Query: 192 N---LQNNTIRTWDA 227
           N    +  + R+W A
Sbjct: 93  NRMYSEQTSFRSWKA 107


>UniRef50_A5UN47 Cluster: Helicase, UvrD/REP family; n=1;
           Methanobrevibacter smithii ATCC 35061|Rep: Helicase,
           UvrD/REP family - Methanobrevibacter smithii (strain PS
           / ATCC 35061 / DSM 861)
          Length = 661

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 20/48 (41%), Positives = 28/48 (58%)
 Frame = +3

Query: 153 IDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISISTKKLTCY*QKTG 296
           +  LKTD  + L NL++N + T   + KNG++  I T KL C   KTG
Sbjct: 481 VQELKTDANVELLNLEHNRLETLKNIEKNGERYVIPT-KLKCPVCKTG 527


>UniRef50_UPI0000E47588 Cluster: PREDICTED: similar to centrosome
           protein 4, partial; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to centrosome protein
           4, partial - Strongylocentrotus purpuratus
          Length = 1062

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
 Frame = +3

Query: 66  LNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMM---LSNLQNNTIRTWDAVVK 236
           +    +EIK  L V  E + +   N++D+IDSL+TD  +    L  LQN T    D + +
Sbjct: 248 IRGSTREIKD-LEVEVEQLRQERKNLLDDIDSLRTDGAVKHQDLKRLQNLT----DKIQE 302

Query: 237 NGKKISISTKKLT 275
           + +K+S    KLT
Sbjct: 303 DKRKLSHQVNKLT 315


>UniRef50_Q9FXH1 Cluster: F6F9.22 protein; n=4; core
           eudicotyledons|Rep: F6F9.22 protein - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 894

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +2

Query: 443 GLHLSKFKNAFASVSTTFVHHPS----KHRKMINDAGGSCHNTVKYMVDIYGASVLILRT 610
           G+H  KF  AF  +S++     +    K+ +M  D    CH+T KY+   YG  +L+  T
Sbjct: 822 GIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRD----CHDTAKYVSKRYGCDILLEDT 877

Query: 611 PC 616
            C
Sbjct: 878 RC 879


>UniRef50_Q75AA9 Cluster: ADR009Wp; n=1; Eremothecium gossypii|Rep:
           ADR009Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 490

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
 Frame = +3

Query: 138 NVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISISTKKLTCY*QKTG*LTTCLT 317
           N +D+IDS+K    +   N+  NTI++W +    G +  I+   +           T  T
Sbjct: 235 NSIDDIDSVKLPKTLKTFNVSQNTIKSWQSQSLKGLQTLIAANNIIADIPPDP-CPTIRT 293

Query: 318 FNKRYLSLS*YTKNHIVATIF*NM---KPTNNVMFDDASVLWIDTDYIYQ 458
            +  Y +++ +       T+F NM   +  NN+   D      DTD  YQ
Sbjct: 294 LDLSYNNIALWDVVDKFQTVFPNMHDLRINNNIFSSDEE----DTDEFYQ 339


>UniRef50_P36865 Cluster: Polyhedral envelope protein; n=2;
           Lymantria dispar MNPV|Rep: Polyhedral envelope protein -
           Lymantria dispar multicapsid nuclear polyhedrosis virus
           (LdMNPV)
          Length = 312

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = +2

Query: 509 SKHRKMIND-------AGGSCHNTVKYMVDIYGASVLILRTPCSFADQLLSTFIANNY 661
           ++H+K  ND        GGS  +  +  VD+YG   L  RT  + AD L + F+A  Y
Sbjct: 49  TRHKKCWNDFRGGGGGGGGSRVDGTRAFVDLYGLGYLCNRTNSTLADYLCTLFVAEAY 106


>UniRef50_Q6XZ06 Cluster: YlbN; n=2; Spiroplasma|Rep: YlbN -
           Spiroplasma kunkelii
          Length = 172

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +3

Query: 438 DTDYIY-QNLKMPLQAFQQLLFTIPLNIEK*STMRADRVITRSNTWWTFTERPF 596
           D +Y+  QN  +   A+ +++  IP+N+ K    + D++I+ ++TW  F+E  F
Sbjct: 96  DINYLNEQNFDIIKYAWDEIIMNIPINLSK----KNDKMISGNSTWQVFSEEEF 145


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,912,229
Number of Sequences: 1657284
Number of extensions: 13207465
Number of successful extensions: 36958
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 35415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36949
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)