Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120564.Seq
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containi...    34   0.091
At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit...    31   1.1  
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi...    29   4.5  
At4g01650.1 68417.m00214 expressed protein                             28   6.0  
At3g03360.1 68416.m00334 F-box family protein low similarity to ...    28   6.0  
At1g69545.1 68414.m07997 leucine-rich repeat family protein cont...    28   7.9  

>At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containing
           protein nearly identical over 405 amino acids to DYW7
           protein of unknown function GB:CAA06829 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 42 (4), 603-613
           (2000)); contains Pfam profile PF01535: PPR repeat
          Length = 894

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +2

Query: 443 GLHLSKFKNAFASVSTTFVHHPS----KHRKMINDAGGSCHNTVKYMVDIYGASVLILRT 610
           G+H  KF  AF  +S++     +    K+ +M  D    CH+T KY+   YG  +L+  T
Sbjct: 822 GIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRD----CHDTAKYVSKRYGCDILLEDT 877

Query: 611 PC 616
            C
Sbjct: 878 RC 879


>At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At16), putative E3 ubiquitin ligase; similar
           to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
           thaliana]
          Length = 170

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 93  SILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDA 227
           +IL ++ E  +KH  + VD+ D     T   ++    N +RTWDA
Sbjct: 50  NILALVIEYCKKHVLDDVDDSDDSTEATSENVNEEAKNELRTWDA 94


>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 990

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 449  HLSKFKNAFASVSTTFVHHPSKHRKMINDAG--GSCHNTVKYMVDIYGASVLI 601
            H  K   AF  +ST     PS   ++I +    G CHN +KY+  +Y   +++
Sbjct: 922  HSEKLAVAFGLLSTP----PSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVL 970


>At4g01650.1 68417.m00214 expressed protein 
          Length = 288

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -2

Query: 303 LTTPFFVNSTLIFSSRWIFFCHFLQLRPTFES 208
           L T F  +STL+ SSR  F C F    P F S
Sbjct: 40  LITSFSPSSTLLASSRRCFTCRFGDSSPRFNS 71


>At3g03360.1 68416.m00334 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 481

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 646 YCKQLFVLLLPSSPITITLEIT 711
           +CK+L VL L  SP  ITLEIT
Sbjct: 221 FCKKLKVLDLSKSPRLITLEIT 242


>At1g69545.1 68414.m07997 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeat domains;
           similar to disease resistance protein RPP1-WsA
           (GI:3860163)[Arabidopsis thaliana]
          Length = 703

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 187 NIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCSSLFKCPA 56
           N+IN+  L  S  S+ +E   SI +     +D   CSSL + P+
Sbjct: 377 NLINLKTLNLSGCSSLVELPSSIGNLNLKKLDLSGCSSLVELPS 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,393,083
Number of Sequences: 28952
Number of extensions: 299967
Number of successful extensions: 872
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)