Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120562X.Seq
         (560 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    27   0.11 
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    27   0.11 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.8  

>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 512 FNFIQSFIQVTN*KTND*ATFVQSKYCSPLINISVGRLDFKLLT 381
           FN +Q FIQ+ N +T      ++++   P I++ V    F LL+
Sbjct: 136 FNILQEFIQIFNEETKRLVEDLEAESHKPYIDVVVPITQFTLLS 179


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 512 FNFIQSFIQVTN*KTND*ATFVQSKYCSPLINISVGRLDFKLLT 381
           FN +Q FIQ+ N +T      ++++   P I++ V    F LL+
Sbjct: 136 FNILQEFIQIFNEETKRLVEDLEAECHKPYIDVVVPITQFTLLS 179


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -2

Query: 541  NSIFFYKRDSLISSNLSYKSPIKRLMIKLPLYSQN 437
            + + FY  +  I+  +S   P +++++ +PLY Q+
Sbjct: 1612 DEVVFYNANFSINYWISEGVPRRKIVMGMPLYGQS 1646


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,741
Number of Sequences: 336
Number of extensions: 981
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)