Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120561.Seq
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   4.9  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    26   4.9  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    25   8.5  

>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +1

Query: 310 MPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 423
           +P+G  P  +R N+C+ +     +     + P  P  Y
Sbjct: 155 VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGY 192


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 533 DRHFELIVASSKMGKTIFDILKRLMRWLLQINHPSS 426
           +R     V S K+GK   +IL  L+R     NHP S
Sbjct: 520 ERTMSNFVNSGKLGKNYTNILCLLLRLRQACNHPQS 555


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 238 LNKRFLLNHKIAVVHIYNGNNMALMPVG 321
           L   F+LN ++A++  Y    M+++PVG
Sbjct: 315 LGNLFILNERVALMGRYKYGFMSMIPVG 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,816
Number of Sequences: 5004
Number of extensions: 60115
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)