Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120561.Seq
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960...    29   5.1  

>03_02_0579 -
           9606317-9606892,9607571-9607799,9607902-9608011,
           9608898-9609275,9609380-9609658,9610044-9610168,
           9610269-9610335,9610582-9612006
          Length = 1062

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = -3

Query: 599 IGCAWN*NSLDTSFFISN*MPSDRHFELIVASSKMGKTIFDILKRLMRWLLQIN 438
           IG A      + +   S+ + +D +F  IVA+   G++I+D +K  +R+++  N
Sbjct: 748 IGVAMGITGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYDNMKAFIRYMISSN 801


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,490,911
Number of Sequences: 37544
Number of extensions: 349915
Number of successful extensions: 661
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)