Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120561.Seq
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50700| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_52094| Best HMM Match : PI-PLC-X (HMM E-Value=0.14)                 28   6.9  
SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)          28   9.1  
SB_51040| Best HMM Match : Kinesin (HMM E-Value=5.89947e-43)           28   9.1  

>SB_50700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 392 HTSHRVRPTRIMT----TDGLSATATSSNVLKCQKWFCPFSTKRQSI 520
           H + +  P R+M      DGLS ++ +SN +KC      +ST++Q +
Sbjct: 36  HYACKGSPFRVMQWNVLADGLSGSSPTSNFIKCPSEALSWSTRKQRL 82


>SB_52094| Best HMM Match : PI-PLC-X (HMM E-Value=0.14)
          Length = 526

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -1

Query: 205 LNSYIVPNYSLAQQYFDLYDENGFRTRIP--IQSACNNIISSVKKTNSKHKK 56
           L S    NYS      ++Y++NGFR  +   I S    +ISS K+ + ++ K
Sbjct: 334 LGSVFKSNYSKGVTLEEVYNDNGFRNSLGFLIPSNITKLISSPKEKDYRNVK 385


>SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)
          Length = 673

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 211 KILNSYIVPNYSLAQQYFDLYDENGFRTRIPIQSACNNIISSVKKTN 71
           K+L+ Y V + S+  QY   YDE   R +I  + A  N +  +  T+
Sbjct: 97  KVLSCYFVLSGSVEAQYSIDYDEEDIRGKIAGKDAQGNSLCEINYTH 143


>SB_51040| Best HMM Match : Kinesin (HMM E-Value=5.89947e-43)
          Length = 197

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 492 AHF-RRSDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFN-LNSMMQAEQLIFHLIY 665
           AHF    D+     +  +L GN +  +   + PSA NY+E  + L    +A++++ H + 
Sbjct: 131 AHFVPYRDSVLTWLLKDNLGGNSKTVMVATISPSADNYEETLSTLRYADRAKKIVNHAVV 190

Query: 666 NNE 674
           N +
Sbjct: 191 NED 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,026,316
Number of Sequences: 59808
Number of extensions: 422345
Number of successful extensions: 947
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)