Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120561.Seq
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39855-5|AAA81084.1|  118|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear recep...    29   4.5  
AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical...    28   6.0  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    28   7.9  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    28   7.9  

>U39855-5|AAA81084.1|  118|Caenorhabditis elegans Hypothetical
           protein F18G5.1 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 319 PRALAPYCCRYKYGP-RQFYD*EEISYSINFSQDLLYKILNSYIVPNYSLAQQYFDLYDE 143
           PR ++ Y  ++KYGP RQ+ D E  + S +  +   + + N ++    ++     D + E
Sbjct: 44  PRRISIYAPKFKYGPNRQYSDDENETLSSDEKETENFSVQNPFVTHQGNIKNANLDNHTE 103


>Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical
           protein C32H11.4 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 316 VGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYH 426
           +GM P  + + + +FA+  S D    + SP  P+ Y+
Sbjct: 146 IGMQPHVLNITQDLFAADFSSDKVALFVSPADPNDYY 182


>Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical
           protein K08H2.8 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -1

Query: 247 SYSINFSQDLLYKILNSYIVPNYSLAQQYFDLYDENGFRTRI---PIQSACNNIISSVKK 77
           +Y + F +D L  + N+YIVP   +  +  D+ DEN  R  +   P+++  N ++  +  
Sbjct: 253 TYELGF-RDRLVLVNNNYIVPGVPINFKGSDVVDENQMRDIMFGEPMRALINELVLPIGS 311

Query: 76  TN 71
            N
Sbjct: 312 QN 313


>AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear receptor
           NHR-32 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -1

Query: 247 SYSINFSQDLLYKILNSYIVPNYSLAQQYFDLYDENGFRTRI---PIQSACNNIISSVKK 77
           +Y + F +D L  + N+YIVP   +  +  D+ DEN  R  +   P+++  N ++  +  
Sbjct: 253 TYELGF-RDRLVLVNNNYIVPGVPINFKGSDVVDENQMRDIMFGEPMRALINELVLPIGS 311

Query: 76  TN 71
            N
Sbjct: 312 QN 313


>AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical
           protein Y38H6C.13 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 112 SACNNIISSVKKTNSKHKKFVYWPK 38
           SAC+N    ++  N+  + F YWP+
Sbjct: 29  SACSNFFQFIRLNNNVMESFEYWPR 53


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
            protein F52C9.1a protein.
          Length = 1336

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 124  IPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALV 20
            + I  A N  I+++ +TNS H   V W  DT  LV
Sbjct: 1266 LAILDARNGKINALAQTNSTHTVSVNWLSDTRLLV 1300


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
            protein F52C9.1b protein.
          Length = 1331

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 124  IPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALV 20
            + I  A N  I+++ +TNS H   V W  DT  LV
Sbjct: 1266 LAILDARNGKINALAQTNSTHTVSVNWLSDTRLLV 1300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,478,433
Number of Sequences: 27780
Number of extensions: 330415
Number of successful extensions: 775
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)