Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120561.Seq
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20450.1 68417.m02984 leucine-rich repeat protein kinase, put...    31   0.60 
At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ...    30   1.8  
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ...    30   1.8  
At3g51440.1 68416.m05634 strictosidine synthase family protein s...    30   1.8  
At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-contain...    29   3.2  
At3g42200.1 68416.m04342 hypothetical protein several hypothetic...    29   3.2  
At4g29180.1 68417.m04175 leucine-rich repeat protein kinase, put...    28   7.4  

>At4g20450.1 68417.m02984 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 898

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -1

Query: 244 YSINFSQDLLYKILNSYIVPNYSLAQQ-YFDLYDENGFRTRIPIQSACNNIISSVKKTNS 68
           Y++   Q   Y I   ++  NY L Q+  FDLY    F T I +Q         +   + 
Sbjct: 97  YNLTVMQGTHYLIRAVFVYGNYDLKQRPKFDLYLGPNFWTTINLQDPSGGFYYRIWLQDG 156

Query: 67  KHKKFVYWPKDTNALVPLV 11
             ++ ++ PK  N  + LV
Sbjct: 157 TVEEVIHMPKSNNLDICLV 175


>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 361

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 573 RILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVIC 695
           R ++ + T+Y + FNL S   A + + HLI + +E + V+C
Sbjct: 147 RKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 494

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 573 RILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVIC 695
           R ++ + T+Y + FNL S   A + + HLI + +E + V+C
Sbjct: 147 RKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At3g51440.1 68416.m05634 strictosidine synthase family protein
           similar to hemomucin [Drosophila
           melanogaster][GI:1280434], strictosidine synthase
           [Rauvolfia serpentina][SP|P15324]; contains
           strictosidine synthase domain PF03088
          Length = 371

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 418 AYHDDGWFI---CNSHLIKRFKMSKMVLPIFDEATINSK*RSLGI*LEIKKEV 567
           AYH+D  FI   C    +KR K+++ V     E  +N+  R LGI   I  EV
Sbjct: 74  AYHEDSGFIYTGCVDGWVKRVKVAESVNDSLVEDLVNTGGRPLGIAFGIHGEV 126


>At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           contains Pfam profiles PF01852: START domain, PF00169:
           PH domain
          Length = 718

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -1

Query: 232 FSQDLLYKILNSYIVPNYSLAQQYFDLYDENGFRTRIPIQ-SACNNIISSVKKTNSKHK 59
           F Q  L ++LNS      +  +++F   DE G  TRIP+  +  ++ +S  K   S HK
Sbjct: 371 FQQHCLLQMLNSV-----AGLREWFSQTDERGVHTRIPVMVNMASSSLSLTKSGKSLHK 424


>At3g42200.1 68416.m04342 hypothetical protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 134

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 413 PTRIMTTDGLSATATSSNVLKCQKWF-CPFSTKRQSIQNDDR*AFSW 550
           P R    +G+ A  + S++  CQ+++ C F+ K + ++ND+   F W
Sbjct: 24  PKRCWCREGVMALISKSDLNPCQRYYRCGFAAKHR-LRNDEH-TFKW 68


>At4g29180.1 68417.m04175 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 911

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 217 LYKILNSYIVPNYS--LAQQYFDLYDENGFRTRIPIQSACNNIISSV 83
           LY I  S++  NY    A   FDLY    F T + +++A  N+I  +
Sbjct: 106 LYLIRASFMYGNYDGKNALPEFDLYVNVNFWTSVKLRNASENVIKEI 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,243,081
Number of Sequences: 28952
Number of extensions: 293602
Number of successful extensions: 682
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)