Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120560.Seq
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 29 1.0
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.4
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 27 3.2
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 27 4.2
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 26 5.6
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 26 5.6
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 7.4
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 26 7.4
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 25 9.8
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 28.7 bits (61), Expect = 1.0
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Frame = +2
Query: 5 EFSKISKLVALVVRKTFCNIFEINNRLVGVRVGANVQRRCGRRLTQIQHDRFASRHD--T 178
E+S+IS A +K I +NN + G G + R ++++ R D T
Sbjct: 620 EYSQISGQDASNAQKRIEVIVNVNN-VYGTIFGNELAYR-QEKISKFTDPSSVIRSDLWT 677
Query: 179 ADAAFFSLQRQLFVVFVSSHRPFASSKSAHLTKL---LSSQATYLYHFACLM 325
+ L R+ +S HR SK AH+ K+ L Q +L CL+
Sbjct: 678 VEVDHLDLLRKQIEDSISLHRDVRDSKDAHILKVSNKLRKQILHLVEQNCLL 729
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 27.5 bits (58), Expect = 2.4
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +2
Query: 311 FACLMKYKDIQKYEVQQLIEWAINASPDMDLQQ--FRIEFMDKTT--ELNLRSCQPKSFT 478
F L + DI YE+ I+ AIN+S L+ R+ D TT E L + P+ F
Sbjct: 567 FNFLERTSDISAYEIACAIKTAINSSKVKLLRSALARLSLFDSTTSREALLLAFVPEDFD 626
Query: 479 YTFTTI 496
F T+
Sbjct: 627 SLFKTL 632
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 320 LMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQ 463
LM K + VQ+++ +AIN S + DL+ + T N+R Q
Sbjct: 495 LMNGKGNDEELVQKVLNYAINQSSNQDLRDRAFAYQRLLTPENVRKAQ 542
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 561 SRFCHAAVENDEGAILQRIFHTTVRHVPRSLYERQRFPHLPH 686
+RF HA+ +L V H + LY +P LPH
Sbjct: 437 NRFTHASPNRSSCVVLMDELDQLVTHNQKVLYNFFNWPSLPH 478
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 691 LIEIALDKEKYGTDITFVDSYQQEPPVRTLRLCRTI 798
LI I L KYGT F+ S R RLC ++
Sbjct: 204 LIPILLKVRKYGTSEKFILSVFHPDAARLYRLCSSL 239
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 227 VSSHRPFASSKSAH-LTKLLSSQATYLYHFACLMKYKDIQKYEVQQLIEWAINASPDMDL 403
+ + P + + H L + S+ T + AC Y D +K E + +I W + +
Sbjct: 297 IKNLHPLTNKSTIHSLLSYVFSRQTQ--NIACEPMYIDYRKDETEAIIRWKTPLHAETCI 354
Query: 404 QQFRIEFMDKTTELNLRSCQPKSFTYTF 487
FR + + + ++R+ + K + F
Sbjct: 355 NAFRTQERKQNSHDDIRAHRKKGSSRPF 382
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 94 DADEPIIYFENITECLTDDQCDKFTYFAELK 2
DAD I+ NI LT ++CD+F Y +K
Sbjct: 1023 DADYAIL---NILNLLTSNECDEFDYSVLMK 1050
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -2
Query: 690 LNVVNEETFDVHIMIAAHGAL*YEKYVVK 604
LN+V E+T D++I +AA +L ++ Y+ K
Sbjct: 39 LNIVAEDTVDINIKLAA--SLYFKNYIKK 65
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 9.8
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 523 IIDDMVYTRD-KSSLDFVMQQLKTMKVLFYNVFFILQCAMCRDHYMNVKGFLIYHIELIE 699
+ID VY+ +S + V Q ++++ + ++ L CR Y N+ + I+
Sbjct: 285 VIDLFVYSGSTESPKETVKQFVQSIGKPAMHQYWTLGYHSCRWGYTNITEIMDVRQNYID 344
Query: 700 IALDKEKYGTDITFVDSYQ 756
+ E + +DI +++ Y+
Sbjct: 345 ADIPVETFWSDIDYMEKYR 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,396,333
Number of Sequences: 5004
Number of extensions: 70751
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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