Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120560.Seq
(820 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_26790| Best HMM Match : DUF262 (HMM E-Value=4.8) 32 0.49
SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.64
SB_32713| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_50063| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_51583| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.5) 29 4.5
SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09) 29 6.0
SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1273
Score = 32.3 bits (70), Expect = 0.49
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 502 HHDFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVL 603
H D++S++IDD Y + ++ V+ ++ T KVL
Sbjct: 435 HGDYMSIVIDDKQYCNNSHGVNIVVLEMLTFKVL 468
>SB_26790| Best HMM Match : DUF262 (HMM E-Value=4.8)
Length = 525
Score = 32.3 bits (70), Expect = 0.49
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Frame = +2
Query: 179 ADAAFFSLQRQLFVVFVSSHRPFASSKSAHLTKLLSSQATYLYHFACLMKYKDIQKYEVQ 358
A+AAFFSL+ +F+ + + SKS ++ S+ + L+ ++ Q + ++
Sbjct: 381 AEAAFFSLRMDVFLQTIL----YLGSKS--ISHSYSALTKFHKILKSLIPTEEAQIHALK 434
Query: 359 QLIEWAINASPDMDL----QQFRIEFMDKTTELNLRSCQPKSFTYTFTTIWDTMTFSV 520
L E+ N SP M + + R++ ++ T +N C+ S +T + W+ MT ++
Sbjct: 435 TLKEFWCN-SPQMTIILVDKLIRMQVVECTAVINWLLCKDMSQDFTKSYTWELMTTTI 491
>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 32.3 bits (70), Expect = 0.49
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = -2
Query: 468 LGWHERKLSSVVLSINSMRNCCKSMSGDALMAHSINCCTSYF*MSLYFIKHAKWY 304
LGWH RK + S S AH CC+ F S F+KH W+
Sbjct: 75 LGWHGRKTPNK--HETQEVKATSSPSTTEPFAHQCTCCSKKFNNSSRFLKHMTWH 127
>SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 31.9 bits (69), Expect = 0.64
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Frame = +2
Query: 251 SSKSAHLTKLLSSQAT---YLYHFACLMKYKDIQKYEVQQLI 367
S+KS + KLL ++ + YLYHF +K K+ +++E +Q+I
Sbjct: 306 SAKSGYNVKLLFTKLSKDLYLYHFTRYLKMKEERRHEGEQII 347
>SB_32713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 519 SHHRRYGVYARQKQSRFCHAAVENDEGAILQRIFHTTVRHVPRSLYERQRFP 674
S +RR+G + Q+ +R + + E +I + H T +P + ++RFP
Sbjct: 25 SSYRRHGTVSLQEMTRRVKSETKGMEWSIQKYTLHNTTDAIPSPVNHKRRFP 76
>SB_50063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 320 LMKYKDIQKYEVQQL--IEWAINASPDMD--LQQFRIEFMDKTTELNLRSCQPKSFTYTF 487
L+ YKD + YE +L IE + + P+++ Q R + + L K + T
Sbjct: 170 LVNYKDTRDYETSELKRIELSHDVYPNLEQFKNQSRTKLLPLQQTLKNLDTTDKQSSATA 229
Query: 488 TTIWDTMTFSVS 523
I+D M+F+VS
Sbjct: 230 NDIYDIMSFAVS 241
>SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 29.1 bits (62), Expect = 4.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 457 VPAQEFYLHVYHHMGHHDFLS 519
+PA E+ L++YH GH D+++
Sbjct: 298 LPAPEYLLYLYHAKGHFDYIN 318
>SB_51583| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.5)
Length = 55
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +3
Query: 399 TCNS--FA*NLWTKPQNSICVRASP 467
TC F ++W+ PQN+ICVR P
Sbjct: 17 TCKKGLFKMSVWSNPQNNICVRECP 41
>SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)
Length = 1396
Score = 28.7 bits (61), Expect = 6.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 457 VPAQEFYLHVYHHMGHHDFLS 519
+PA E+ L++YH GH D+++
Sbjct: 366 LPAPEYRLYLYHAKGHFDYIN 386
>SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 573 HAAVENDEGAILQRIFHTTVRH 638
HA ++ D+G I + F TTVRH
Sbjct: 326 HAKIKRDKGLISNKEFKTTVRH 347
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,910,451
Number of Sequences: 59808
Number of extensions: 551609
Number of successful extensions: 1331
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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