Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120560.Seq
(820 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023838-2|CAA19505.1| 452|Caenorhabditis elegans Hypothetical ... 30 2.3
AC025724-8|AAG23381.1| 460|Caenorhabditis elegans Hypothetical ... 30 2.3
Z93377-3|CAB07580.1| 358|Caenorhabditis elegans Hypothetical pr... 29 5.3
U23452-5|AAK31546.1| 304|Caenorhabditis elegans Hypothetical pr... 29 5.3
U70851-5|AAB09127.1| 305|Caenorhabditis elegans Hypothetical pr... 28 7.0
AL110478-3|CAB54348.1| 380|Caenorhabditis elegans Hypothetical ... 28 7.0
U41746-5|AAT81186.1| 492|Caenorhabditis elegans Innexin protein... 28 9.2
U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein... 28 9.2
AF016420-7|AAB65303.1| 428|Caenorhabditis elegans Serpentine re... 28 9.2
>AL023838-2|CAA19505.1| 452|Caenorhabditis elegans Hypothetical
protein Y43C5A.2 protein.
Length = 452
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 112 YVSADTDADEPIIYFENITECLTDDQCDKFTYF 14
Y S TD F+N T L D CD+F YF
Sbjct: 327 YSSTYTDLGAKFSTFDNFTGPLGKDDCDEFQYF 359
>AC025724-8|AAG23381.1| 460|Caenorhabditis elegans Hypothetical
protein Y67D8C.2 protein.
Length = 460
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +1
Query: 574 MQQLKTMKVLFYNVFFILQCAMCR----DHYMNVKGFLIYHIELIEIALDKEKYGTDI 735
M++LK ++ +++ + +CR DHY +K F+I ++ +E +KE Y I
Sbjct: 1 MKRLKLRTLISNEYYYVAEAEVCRAPLADHYKVLKNFIISYVRKLE--ENKELYSAGI 56
>Z93377-3|CAB07580.1| 358|Caenorhabditis elegans Hypothetical
protein F13A7.7 protein.
Length = 358
Score = 28.7 bits (61), Expect = 5.3
Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Frame = +1
Query: 400 LATVSHRIYGQNHRTQFAFVPAQEFYLHVYHHMGHHDFLSLIIDDMVYTRDKSSLDFVMQ 579
+A V ++ G+N Q F +E Y+ V+++ HH F+ I D + T D + +++
Sbjct: 87 MADVRKQLTGRNPAVQVLFDKTREHYILVHYNPRHH-FIE--IYDSLQTFDTNGKPTIIR 143
Query: 580 QL-KTMKVLFYNVF-FILQCAMCRDHYMNVKGFLI-YHI--ELIEIALDK 714
++ + +F ++F + C + +++ + F Y + L++IA DK
Sbjct: 144 EICVQISNMFGHLFRRDIPCLIDKEYELQSDNFSCGYRVIGALVDIARDK 193
>U23452-5|AAK31546.1| 304|Caenorhabditis elegans Hypothetical
protein R07G3.6 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 138 VRRRPQRRCTLAPTRTPTSLLF 73
+RR+PQ TL PT TPT LF
Sbjct: 159 LRRKPQSIPTLPPTTTPTPRLF 180
>U70851-5|AAB09127.1| 305|Caenorhabditis elegans Hypothetical
protein M02B7.1 protein.
Length = 305
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 534 YGVYARQKQSRFCHAAVENDEGAILQRIFHTTVRHVPRSLY 656
Y + Q S + +E DE IL+ H +RHVPR L+
Sbjct: 137 YSIIIPQSLSMEMLSRIEQDE--ILKTAKHLDIRHVPRELF 175
>AL110478-3|CAB54348.1| 380|Caenorhabditis elegans Hypothetical
protein Y26D4A.8 protein.
Length = 380
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 316 VFDEIQRHSKIRGAAVDRMGH*RIPRHGLA----TVSHRIYGQN 435
+F E+Q+HS+I A V+++ R H LA T H YG +
Sbjct: 285 LFKELQKHSRILYATVNKIPVVRKTNHALACVRKTTEHLAYGSS 328
>U41746-5|AAT81186.1| 492|Caenorhabditis elegans Innexin protein
10, isoform b protein.
Length = 492
Score = 27.9 bits (59), Expect = 9.2
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Frame = +1
Query: 448 FAFVPAQEFYLHVYHHMGHHDFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFFIL 627
F V +F + V +M H +++ ++ +K + L + F + F+ L
Sbjct: 249 FPRVSLCDFDVRVMGNMQEHTIQCVLVINIF--NEKIFILLWFWYLALLVFTFGSFFYWL 306
Query: 628 QCAMCRDHYMNVKGFLIYHIELIEIALDKEKYGTD---ITFVDSYQQEPPVRTLRL 786
++ R ++NV+ F+I H+E+ +IA D + G F+ +Y + V +R+
Sbjct: 307 LVSLWR--HLNVR-FIIRHLEMSDIAFDSSEDGAQEKVNRFISNYLKSDGVFVIRM 359
>U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein
10, isoform a protein.
Length = 559
Score = 27.9 bits (59), Expect = 9.2
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Frame = +1
Query: 448 FAFVPAQEFYLHVYHHMGHHDFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFFIL 627
F V +F + V +M H +++ ++ +K + L + F + F+ L
Sbjct: 249 FPRVSLCDFDVRVMGNMQEHTIQCVLVINIF--NEKIFILLWFWYLALLVFTFGSFFYWL 306
Query: 628 QCAMCRDHYMNVKGFLIYHIELIEIALDKEKYGTD---ITFVDSYQQEPPVRTLRL 786
++ R ++NV+ F+I H+E+ +IA D + G F+ +Y + V +R+
Sbjct: 307 LVSLWR--HLNVR-FIIRHLEMSDIAFDSSEDGAQEKVNRFISNYLKSDGVFVIRM 359
>AF016420-7|AAB65303.1| 428|Caenorhabditis elegans Serpentine
receptor, class r protein8 protein.
Length = 428
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 598 VLFYNVFFILQCAMCRDHYMNVKGFLIYHIELIEIALDKEKYGTDITFVDSYQQ 759
++FYNVF + + ++H LI + E E + D Y T +D +Q+
Sbjct: 330 IIFYNVFVMFPAIILQEHLKTTTRILINNDE-FECSKDPIVYQTYRIMIDRFQK 382
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,177,384
Number of Sequences: 27780
Number of extensions: 415493
Number of successful extensions: 1150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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