Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120560.Seq
         (820 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41280.1 68418.m05017 hypothetical protein contains Pfam prof...    30   2.1  
At2g26740.1 68415.m03207 epoxide hydrolase, soluble (sEH) identi...    29   3.7  
At3g59240.1 68416.m06604 F-box family protein contains F-box dom...    29   4.9  
At2g26750.1 68415.m03208 epoxide hydrolase, putative strong simi...    28   6.5  
At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ bo...    28   6.5  
At2g21370.2 68415.m02542 xylulose kinase, putative similar to xy...    28   8.6  
At2g21370.1 68415.m02543 xylulose kinase, putative similar to xy...    28   8.6  

>At5g41280.1 68418.m05017 hypothetical protein contains Pfam
           profile: PF01657 domain of unknown function
          Length = 286

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +2

Query: 302 LYHFACLMKYKD---IQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQPKS 472
           +Y+F+C+++Y D   +   E +    W+ +        +F     DK  E+ +RS    S
Sbjct: 117 IYYFSCMVRYSDKFFLSTLETKPNTYWSSDDPIPKSYDKFGQRLSDKMGEVIIRSSLLSS 176

Query: 473 FTYTFTTIWDTMTF 514
            ++T   + DT TF
Sbjct: 177 -SFTPYYLMDTTTF 189


>At2g26740.1 68415.m03207 epoxide hydrolase, soluble (sEH) identical
           to ATsEH [Arabidopsis thaliana] GI:1109600
          Length = 321

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 726 DRHYVCRFVPTGTAGADAAAVSNNMLMKNLM 818
           D +Y+CRF   G   A+ A V    +MK L+
Sbjct: 151 DDYYICRFQEFGDVEAEIAEVGTERVMKRLL 181


>At3g59240.1 68416.m06604 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 504

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 245 FASSKSAHLTKLLSSQATYLYHFACLMKYKD 337
           F  +K A LT LLS +  YL+ FA ++ + D
Sbjct: 24  FVPTKEAALTSLLSEKWRYLFAFAPILDFDD 54


>At2g26750.1 68415.m03208 epoxide hydrolase, putative strong
           similarity to ATsEH [Arabidopsis thaliana] GI:1109600
          Length = 320

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 732 HYVCRFVPTGTAGADAAAVSNNMLMKNLM 818
           +YVCRF   G   A+ A V    +MK L+
Sbjct: 152 YYVCRFQEVGDIEAEIAEVGTERVMKRLL 180


>At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ
           boundaries domain protein 1 (LBD1) identical to
           SP|Q9LQR0 LOB domain protein 1 {Arabidopsis thaliana}
          Length = 190

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -2

Query: 234 DETNTTNSCLCNEKKAASAVSWRLAKRSCCIC--VRRRPQRRCTLAPTRTPT 85
           D +  T   + +      ++S R+    C  C  +RRR   RC LAP   PT
Sbjct: 6   DASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPT 57


>At2g21370.2 68415.m02542 xylulose kinase, putative similar to
           xylulose kinase (Xylulokinase) [Bacillus subtilis]
           Swiss-Prot:P39211
          Length = 385

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 531 RYGVYARQKQSRFCHAAVENDEGAILQRIF 620
           RYGVY+ +   ++      N  GAIL+++F
Sbjct: 223 RYGVYSHRLDDKWLVGGASNTGGAILRQLF 252


>At2g21370.1 68415.m02543 xylulose kinase, putative similar to
           xylulose kinase (Xylulokinase) [Bacillus subtilis]
           Swiss-Prot:P39211
          Length = 478

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 531 RYGVYARQKQSRFCHAAVENDEGAILQRIF 620
           RYGVY+ +   ++      N  GAIL+++F
Sbjct: 316 RYGVYSHRLDDKWLVGGASNTGGAILRQLF 345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,551,370
Number of Sequences: 28952
Number of extensions: 363086
Number of successful extensions: 1021
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)