Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120559.Seq
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)                29   5.4  
SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
          Length = 890

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
 Frame = +1

Query: 538 ETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVF-------STLAFIHNRF 696
           +T++  LAL  Y       E+T  LLE+  N+ D   +  + F       S L +   RF
Sbjct: 753 DTVEQSLALHVYGVEEPGTEITVDLLEVLHNRLDDATLEVISFMLARNPGSKLTYADVRF 812

Query: 697 -HPLVTNFTNKMEFVVTETND 756
             PL T+ T  + FV+   ++
Sbjct: 813 IQPLGTSPTVTLRFVIPPVDE 833


>SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
 Frame = +1

Query: 538 ETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVF-------STLAFIHNRF 696
           +T++  LAL  Y       E+T  LLE+  N+ D   +  + F       S L +   RF
Sbjct: 229 DTVEQSLALHVYGVEEPGTEITVDLLEVLHNRLDDATLEVISFMLARNPGSKLTYADVRF 288

Query: 697 -HPLVTNFTNKMEFVVTETND 756
             PL T+ T  + FV+   ++
Sbjct: 289 IQPLGTSPTVTLRFVIPPVDE 309


>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = -1

Query: 725 LLVKLVTSGWNLLC-IKANVLNTTAAICRVSALFLNISNSGWVISRVLSIAMYLLSANLI 549
           L+ K VT   NLL  ++ ++L     +  V+  F +I +SG  +  +LS+ M  +   L 
Sbjct: 357 LIRKFVTELLNLLFNVRFSILLPKLMLVVVAFGFYSIHSSGGAMGALLSLMMLTMLRCLP 416

Query: 548 FRVS*LSKLLRFFNQIRPIRRFFG 477
           FR+   + ++ F   +     +FG
Sbjct: 417 FRIRSFNFMIIFSLLMNIANAYFG 440


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,882,521
Number of Sequences: 59808
Number of extensions: 361758
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)