Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120558.Seq
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 103 3e-23
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.31
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 29 0.71
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 3.8
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 3.8
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 26 6.6
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 8.8
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 25 8.8
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 103 bits (247), Expect = 3e-23
Identities = 60/148 (40%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = -3
Query: 692 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG-DIQIEGFNXXXXXXXXXXX 516
M +YKD+I+GDE+ SD Y +K VD+++YE ++VT QG D+ I G N
Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59
Query: 515 RP*ERS*HSPEPQASRNIRFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVM 336
E + F DKKSY Y+K YMK + A+L+E P++V VF+ N +
Sbjct: 60 EGTETVNNLVYSFRLSPTSF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFV 118
Query: 335 KDILGRFKELQFFTGESMDCDGMVAMMN 252
K IL FK+ F+ GESMD D MV +MN
Sbjct: 119 KKILANFKDYDFYIGESMDPDAMVVLMN 146
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 252 YRDFDGTQIPIMMFFKHGLEEEKF 181
YR+ DG P M+FFK GL EKF
Sbjct: 147 YRE-DGIT-PYMIFFKDGLVSEKF 168
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.3 bits (65), Expect = 0.31
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -3
Query: 392 EEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMNIE 246
E+ +Q E K+ + K++ EL+ E++D DG + N+E
Sbjct: 1479 EQITKEQFEQLKSEKERTEKELADSKNELEHLQSEAVDADGKTEISNLE 1527
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 29.1 bits (62), Expect = 0.71
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 140 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLY 253
AS ELL+ NFS+ R CL+N ++ CVP +Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 655 ISSPVIMSL*IFILMDWRRLKII 723
ISSP I + IFILM+ RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 633 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 743
+F + + L T + LI + +E+IK KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 6.6
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +3
Query: 462 YVSTSLWFRTMSTPLSRPSPCPRQPLQPKIKTLDLDITLCSRHQPTGHFVNNFIDQFHFV 641
Y+++ LW++ S SRP P++ L+ K+L + + F+N F++
Sbjct: 643 YLASHLWWQVASGEDSRPFQDPKRVLECLQKSLKIADACMDQLTSLKLFINILERYFYYY 702
Query: 642 SVREHLITSDNV--LIDLHFDGLEAI 713
I + ++ LIDL + +I
Sbjct: 703 DQHCESIIAKHISGLIDLTEQNMRSI 728
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 300 ELKFLKPAEDVFHYFVHVCFKYFNLVR 380
+ FLKP ++ YF+ + +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/87 (17%), Positives = 40/87 (45%)
Frame = +3
Query: 462 YVSTSLWFRTMSTPLSRPSPCPRQPLQPKIKTLDLDITLCSRHQPTGHFVNNFIDQFHFV 641
Y + +W+ + L+ P R + I + L + T ++ F + +++
Sbjct: 414 YFESIMWYTAIHFYLAFPDNSSRDGIDDIIAEYETG-RLFDINAFTEQELDGFEELLNYL 472
Query: 642 SVREHLITSDNVLIDLHFDGLEAIKNN 722
+R ++ +++ID++ + ++ KNN
Sbjct: 473 YIRAQILRDCDIIIDIYNEPVKISKNN 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,119,291
Number of Sequences: 5004
Number of extensions: 65138
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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