Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120558.Seq
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    70   2e-12
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656...    32   0.56 
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784     31   1.3  
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116...    30   2.3  
08_01_0411 + 3670758-3672365                                           28   9.2  
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873...    28   9.2  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
 Frame = -3

Query: 692 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNXXXXXXXXXXX 516
           M +Y+D++TGDE+ SD++  + ++  +++EV G+ V +   D+ I G N           
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59

Query: 515 RP*E--RS*HSPEPQASRNIRFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNK 342
              +  +     +    +     DKK +  ++K Y+K L AKL+    ++ E FK N+  
Sbjct: 60  VDDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIEG 116

Query: 341 VMKDILGRFKELQFFTGESMDCDG 270
             K +LG+ K+LQFF GESM  DG
Sbjct: 117 ATKYLLGKLKDLQFFVGESMHDDG 140


>01_05_0142 -
           18564697-18564792,18564824-18564928,18565606-18565678,
           18566262-18567637
          Length = 549

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
 Frame = +3

Query: 162 ISYLTFRISLLLDH-V*KTS*LVFAYHQSLYIHHGNHAITIHGLPSKEL----KFLKPAE 326
           IS+LT +++  L++ +      +   H+    HH  H   ++  PSK+L    ++L+   
Sbjct: 214 ISFLTDKVAQSLENFIQYHPRAIQEAHRPKDFHHMLHLFQMYLKPSKKLVEGSQYLERGR 273

Query: 327 DVFHYFVHVCFKYFNLVRRL 386
             FH F ++C++Y  + R+L
Sbjct: 274 -YFHSFANICYRYLKIGRKL 292


>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
          Length = 1035

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 519 PCPRQPLQPKIK-TLDLDITLCSRHQPTGHFVNNFIDQFHFVSVRE 653
           PCPR PL+ K   +  ++I    + Q   + + NFID  H ++V +
Sbjct: 739 PCPRLPLESKCNGSCKVEIRNRKQLQGNDNILGNFIDTVHSLNVHD 784


>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
            1164082-1164240,1164663-1164797,1165116-1165268,
            1165358-1165479,1165599-1166541,1166677-1166728,
            1166873-1167963,1168058-1168384,1168479-1168559,
            1168649-1168717,1168809-1168937,1169038-1169121,
            1169210-1169275
          Length = 1321

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -3

Query: 455  GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 282
            G +K  TL  L++Y+  +V A L+    +Q+E FK  +NKV        K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194

Query: 281  D 279
            +
Sbjct: 1195 E 1195


>08_01_0411 + 3670758-3672365
          Length = 535

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 508 HGRVRALVSLFSRRLKPSIWISP 576
           +G  R  +++F+R LKP +W+ P
Sbjct: 265 NGCAREALAVFNRMLKPHVWVMP 287


>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
            19387454-19388884,19388953-19389118,19392035-19392114,
            19392393-19392462,19392550-19392761,19392837-19392890,
            19393471-19393623,19393715-19393930,19394029-19394248,
            19394332-19394399,19394510-19394643,19394755-19394854,
            19394943-19395421,19395506-19395699,19396270-19396355,
            19396364-19396444,19396842-19397023,19397305-19397346,
            19398247-19398558,19399374-19399434,19399435-19399617,
            19399744-19399863,19400380-19401051,19402597-19402668,
            19402742-19402865,19403563-19403651,19405023-19405097
          Length = 2170

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 208  EKHHDWYLRTIKVSIFIMATMP 273
            EKH +WYL    VSI ++  MP
Sbjct: 1134 EKHMNWYLHPEHVSILLVRLMP 1155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,243,081
Number of Sequences: 37544
Number of extensions: 383982
Number of successful extensions: 1002
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)