Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120558.Seq
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         28   7.1  
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)                28   7.1  

>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 486  RTMSTPLSRPSPCPRQPLQPKIKTLDLDITL 578
            R   TP S     PR PLQ +   LDL+ITL
Sbjct: 2007 RPAPTPPSNVDTSPRPPLQKRDSGLDLEITL 2037


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +3

Query: 420  VFEVQCVGFLVTEAYVSTSLWFRTMSTPLSRPSPCPRQPLQPKIKTLDLDI 572
            +F VQ   + +T   V  +     +  P++RP P PR    P++  + +D+
Sbjct: 2223 LFCVQLFNYALTSRQVRAARRRCFLKAPITRPPPTPRPTKPPRVCRVRIDL 2273


>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
          Length = 1064

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 362 ILQLGQAPSLPILLLIFSYSL*GTMCRISCHRSVC 466
           +L+  Q  S    LL+  Y +  T  R+ CHR VC
Sbjct: 305 LLRCNQTRSEICTLLMGEYPMGSTKFRVKCHRGVC 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,507,430
Number of Sequences: 59808
Number of extensions: 451550
Number of successful extensions: 1117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)