Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120558.Seq
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical p...    69   5e-12
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    31   1.2  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      31   1.2  
AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical pr...    28   6.2  
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical
           protein F25H2.11 protein.
          Length = 181

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
 Frame = -3

Query: 692 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNXXXXXXXXXXXR 513
           M IYKDI T DE+ SD++ MKLVD+++YE  G+ V R +G+I + G N            
Sbjct: 1   MLIYKDIFTDDELSSDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGS 60

Query: 512 P*ERS*HSPEPQASRNI----RFGDKKSYTLYLKDYMKKLVAKLEEKAPDQ--VEVFKTN 351
             E      +   +  +     + D   +  Y+K +MK ++  +E+   D+  V+ FK  
Sbjct: 61  D-EHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKK 119

Query: 350 MNKVMKDILG--RFKELQFFTGE 288
           +   +  +L   RFK L FF GE
Sbjct: 120 IQGWVVSLLAKDRFKNLAFFIGE 142



 Score = 34.3 bits (75), Expect = 0.094
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 255 EYRDFDGTQIPIMMFFKHGLEEEK 184
           EYRD DGT++P +M  K  + EEK
Sbjct: 157 EYRDVDGTEVPTLMLVKEAIIEEK 180



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -1

Query: 508 ESGVDIVLNHRLVE 467
           E G+DIVLNH+LVE
Sbjct: 65  ERGIDIVLNHKLVE 78


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/66 (31%), Positives = 37/66 (56%)
 Frame = -3

Query: 449 KKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDG 270
           +K+Y  YL+++MK LVA + EK   ++ V  T + K +  I+    E    + E++ C  
Sbjct: 754 EKTYKQYLREFMKSLVALMSEKKA-KMTVQNTAL-KSIPTIIDLLNESDSVSPENL-CGF 810

Query: 269 MVAMMN 252
           +V +MN
Sbjct: 811 IVDLMN 816


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/66 (31%), Positives = 37/66 (56%)
 Frame = -3

Query: 449 KKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDG 270
           +K+Y  YL+++MK LVA + EK   ++ V  T + K +  I+    E    + E++ C  
Sbjct: 754 EKTYKQYLREFMKSLVALMSEKKA-KMTVQNTAL-KSIPTIIDLLNESDSVSPENL-CGF 810

Query: 269 MVAMMN 252
           +V +MN
Sbjct: 811 IVDLMN 816


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/66 (31%), Positives = 37/66 (56%)
 Frame = -3

Query: 449 KKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDG 270
           +K+Y  YL+++MK LVA + EK   ++ V  T + K +  I+    E    + E++ C  
Sbjct: 754 EKTYKQYLREFMKSLVALMSEKKA-KMTVQNTAL-KSIPTIIDLLNESDSVSPENL-CGF 810

Query: 269 MVAMMN 252
           +V +MN
Sbjct: 811 IVDLMN 816


>AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical
           protein F52F10.2 protein.
          Length = 508

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 342 FVHVCFKYFNLVRRLLFQFCY*FFHI 419
           F+++C +Y    RR L  FCY  F I
Sbjct: 137 FIYLCIEYLPTGRRYLMMFCYILFDI 162


>Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical
           protein ZK945.3 protein.
          Length = 766

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -3

Query: 452 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKE 309
           +KK+  L L    +K + K+EEKA       K+ ++K +KD L R K+
Sbjct: 22  EKKAKGLKLNKVDRKRIVKIEEKA-----ALKSKVDKAVKDELERLKK 64


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 11  LFYCCMQYIFLNTKLFSLVMREASSCQDADMIDK*IKK 124
           LFYC + Y+F+   +  +  RE S  +D   I + IK+
Sbjct: 505 LFYCSLLYLFIFVTVQMIPAREISIMKDLHHIGREIKR 542


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,103,369
Number of Sequences: 27780
Number of extensions: 357745
Number of successful extensions: 1015
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)