Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120558.Seq
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16640.1 68416.m02127 translationally controlled tumor family...    63   2e-10
At3g05540.1 68416.m00607 translationally controlled tumor family...    60   2e-09
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    31   0.82 
At1g63910.1 68414.m07236 myb family transcription factor (MYB103...    29   3.3  
At1g69740.1 68414.m08025 porphobilinogen synthase, putative / de...    29   4.4  
At5g59960.1 68418.m07520 expressed protein                             28   5.8  

>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
 Frame = -3

Query: 692 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNXXXXXXXXXXX 516
           M +Y+D++TGDE+ SD++  K ++  +++EV G+ VT    D+ I G N           
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEG 59

Query: 515 RP*--ERS*HSPEPQASRNIRFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNK 342
                ++     +    +     DKK +  Y+K Y+K L  KL E+  DQ  VFK  +  
Sbjct: 60  VDDSTQKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIEG 116

Query: 341 VMKDILGRFKELQFFTGESMDCD 273
             K +L R  + QFF GE M  D
Sbjct: 117 ATKFLLPRLSDFQFFVGEGMHDD 139


>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
 Frame = -3

Query: 692 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNXXXXXXXXXXX 516
           M +Y+DI+TGDE+ SD++  K ++  +++EV G+  +  +G  + EG +           
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIENGMLWEVEGKNPSGEEGG-EDEGVDDQAVKVVDIID 59

Query: 515 RP*ERS*HSPEPQASRNIRFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVM 336
                     + Q S      DKK + +++K Y+K+L  KL+    +  E+FK ++    
Sbjct: 60  T------FRLQEQPSF-----DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIESAT 105

Query: 335 KDILGRFKELQFFTGESMD 279
           K ++ + K+ QFF GESM+
Sbjct: 106 KFLMSKLKDFQFFVGESME 124


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 422 DYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ-FFTGESMD 279
           D M+  + KL    P  +EVFK+N N + ++    F ++  FF GE  D
Sbjct: 226 DKMEVKLLKLNHPPPQIMEVFKSNYNALNENEKSMFLDIACFFRGEKAD 274


>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 370

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 582 SRHQPTGHFVNNFIDQFHFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKN 737
           SRHQP+   V    D     +  E   T+ + + +LHFDG     N  N  N
Sbjct: 124 SRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLNFTN 175


>At1g69740.1 68414.m08025 porphobilinogen synthase, putative /
           delta-aminolevulinic acid dehydratase, putative similar
           to delta-aminolevulinic acid dehydratase (Alad)
           GI:493019 [SP|P43210] from Glycine max, SP|P24493 from
           Spinacia oleracea, SP|P30124 from Pisum sativum
          Length = 430

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 467 NIRFGDKKSYTLYLKDYMKKLVAKLEEKA 381
           N RFGDKK+Y +   +Y + L+   E++A
Sbjct: 314 NPRFGDKKTYQMNPANYREALIEAREDEA 342


>At5g59960.1 68418.m07520 expressed protein
          Length = 359

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 454 PKRMFRLACGSGLCQLRSHGRV-RALVSLFSRRLKPSIWISPC 579
           P R  R A    L  L   GR  R L+SLF R L P  W S C
Sbjct: 288 PTRAVRHAAWDALDSLFPVGRYPRHLISLFFRLLYPWYWPSSC 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,978,299
Number of Sequences: 28952
Number of extensions: 326727
Number of successful extensions: 891
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)