Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120557.Seq
(865 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 2e-18
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07) 61 1e-09
SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0) 39 0.005
SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5) 34 0.17
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.40
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 90.2 bits (214), Expect = 2e-18
Identities = 36/61 (59%), Positives = 44/61 (72%)
Frame = +2
Query: 59 RPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDLGN 238
+P KI+G + L G HGFH+H YGD +NGC SAG HFNP ++HG P E RHVGDLGN
Sbjct: 26 KPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDLGN 85
Query: 239 I 241
+
Sbjct: 86 V 86
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/55 (54%), Positives = 42/55 (76%)
Frame = +1
Query: 271 INMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 435
I+M D +++L G H+++GRS+VVH D+DDLG H SKTTG++ GRL CG+I I
Sbjct: 96 IDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGRLACGVIGI 150
>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
Length = 100
Score = 61.3 bits (142), Expect = 1e-09
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = +1
Query: 313 NIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIA 432
+IIGR++VVH D+DDLG H LSK+TGNS R+GCGIIA
Sbjct: 29 DIIGRAIVVHADEDDLGRGGHELSKSTGNSGARVGCGIIA 68
>SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1358
Score = 39.1 bits (87), Expect = 0.005
Identities = 20/90 (22%), Positives = 45/90 (50%)
Frame = +3
Query: 513 CFSKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVI 692
C +K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1145 CSAKVNVSHDMTLVAKVNVSHDMTLVAKVNVLHDMTLVAKVNVSHDMTLVAKVNVSHDMT 1204
Query: 693 CFSKLNLRNDVICFSKLNWLYEYILLVKHN 782
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1205 LVAKVNVSHDMTLVAKVNVSHDMTLVAKVN 1234
Score = 39.1 bits (87), Expect = 0.005
Identities = 20/88 (22%), Positives = 45/88 (51%)
Frame = +3
Query: 519 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 698
+K+N+ +D+ +K+N L++ K D+ +K+N ++ K D+
Sbjct: 1159 AKVNVSHDMTLVAKVNVLHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1218
Query: 699 SKLNLRNDVICFSKLNWLYEYILLVKHN 782
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1219 AKVNVSHDMTLVAKVNVSHDMTLVAKVN 1246
Score = 37.9 bits (84), Expect = 0.011
Identities = 20/88 (22%), Positives = 44/88 (50%)
Frame = +3
Query: 519 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 698
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1255 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1314
Query: 699 SKLNLRNDVICFSKLNWLYEYILLVKHN 782
+K+N+ +D+ +K+N +E L+ K N
Sbjct: 1315 AKVNMSHDMSLVAKVNVSHEMTLVAKVN 1342
Score = 37.1 bits (82), Expect = 0.018
Identities = 19/88 (21%), Positives = 44/88 (50%)
Frame = +3
Query: 519 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 698
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1243 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1302
Query: 699 SKLNLRNDVICFSKLNWLYEYILLVKHN 782
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1303 AKVNVSHDMTLVAKVNMSHDMSLVAKVN 1330
Score = 36.7 bits (81), Expect = 0.024
Identities = 19/88 (21%), Positives = 44/88 (50%)
Frame = +3
Query: 519 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 698
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1183 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1242
Query: 699 SKLNLRNDVICFSKLNWLYEYILLVKHN 782
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1243 AKVNVSHDMTLVAKVNVSHDMTLVAKVN 1270
Score = 36.7 bits (81), Expect = 0.024
Identities = 19/88 (21%), Positives = 44/88 (50%)
Frame = +3
Query: 519 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 698
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1195 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1254
Query: 699 SKLNLRNDVICFSKLNWLYEYILLVKHN 782
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1255 AKVNVSHDMTLVAKVNVSHDMTLVAKVN 1282
Score = 36.7 bits (81), Expect = 0.024
Identities = 19/88 (21%), Positives = 44/88 (50%)
Frame = +3
Query: 519 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 698
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1207 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1266
Query: 699 SKLNLRNDVICFSKLNWLYEYILLVKHN 782
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1267 AKVNVSHDMTLVAKVNVSHDMTLVAKVN 1294
Score = 36.7 bits (81), Expect = 0.024
Identities = 19/88 (21%), Positives = 44/88 (50%)
Frame = +3
Query: 519 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 698
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1219 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1278
Query: 699 SKLNLRNDVICFSKLNWLYEYILLVKHN 782
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1279 AKVNVSHDMTLVAKVNVSHDMTLVAKVN 1306
Score = 36.7 bits (81), Expect = 0.024
Identities = 19/88 (21%), Positives = 44/88 (50%)
Frame = +3
Query: 519 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 698
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1231 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1290
Query: 699 SKLNLRNDVICFSKLNWLYEYILLVKHN 782
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1291 AKVNVSHDMTLVAKVNVSHDMTLVAKVN 1318
Score = 36.3 bits (80), Expect = 0.032
Identities = 19/88 (21%), Positives = 44/88 (50%)
Frame = +3
Query: 519 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 698
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1171 AKVNVLHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1230
Query: 699 SKLNLRNDVICFSKLNWLYEYILLVKHN 782
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1231 AKVNVSHDMTLVAKVNVSHDMTLVAKVN 1258
Score = 35.9 bits (79), Expect = 0.043
Identities = 19/92 (20%), Positives = 46/92 (50%)
Frame = +3
Query: 519 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 698
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1267 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNMSHDMSLV 1326
Query: 699 SKLNLRNDVICFSKLNWLYEYILLVKHNPGMM 794
+K+N+ +++ +K+N ++ L+ K N M+
Sbjct: 1327 AKVNVSHEMTLVAKVNVSHDMTLVAKVNGHMI 1358
>SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5)
Length = 184
Score = 33.9 bits (74), Expect = 0.17
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Frame = +3
Query: 498 KR*C-ICFSKLNLRNDV-ICFSKLNWLYEYNSTCKT*SRDDV---ICFSKLNSLYE*NST 662
KR C IC SK V IC + WLY + C+ SR ++ IC + L+
Sbjct: 10 KRVCRICQSKGRQNLSVAICQFSVRWLYAFKRVCRFVSRQNLSVAICQCSVRWLFAVKRV 69
Query: 663 CKTQSRDDVICFSKLNLRNDVICFSKLNWLYEY 761
C+ + + NL + IC S + WLY +
Sbjct: 70 CRIRQST-----GRQNL-SVAICQSSVRWLYAF 96
>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 32.7 bits (71), Expect = 0.40
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +2
Query: 191 HGAPDAEIRHVGDLGNIKS 247
HGAP+ + RH+GDLGNI++
Sbjct: 2 HGAPEDKDRHLGDLGNIEA 20
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,137,448
Number of Sequences: 59808
Number of extensions: 578472
Number of successful extensions: 1195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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