Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120557.Seq
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc sup...   101   7e-22
L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide dism...   101   7e-22
AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxi...   101   7e-22
AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxi...   101   7e-22
U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide...    94   1e-19
Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical pr...    91   1e-18
AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide di...    91   1e-18
AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.     91   1e-18
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z81110-3|CAB03257.1|  323|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical p...    28   9.9  

>X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc
           superoxide dismutase protein.
          Length = 158

 Score =  101 bits (242), Expect = 7e-22
 Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
 Frame = +2

Query: 5   IISGD-VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPT 181
           ++ G+ V G I+  Q+S N    I G +  L  GLHGFHVH+YGD++NGC SAG HFNP 
Sbjct: 8   VLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPF 67

Query: 182 NEDHGAPDAEIRHVGDLGNIKS 247
            + HG P +EIRHVGDLGN+++
Sbjct: 68  GKTHGGPKSEIRHVGDLGNVEA 89



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
 Frame = +1

Query: 229 LGQHKVGWLNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL---TEHPLSKTTGN 399
           LG  + G  + + +I + D +++LYGP+ ++GRS+VVH  +DDLG     +   SK TGN
Sbjct: 84  LGNVEAG-ADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGN 142

Query: 400 SDGRLGCGIIAI 435
           +  R  CG+IA+
Sbjct: 143 AGARAACGVIAL 154


>L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 158

 Score =  101 bits (242), Expect = 7e-22
 Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
 Frame = +2

Query: 5   IISGD-VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPT 181
           ++ G+ V G I+  Q+S N    I G +  L  GLHGFHVH+YGD++NGC SAG HFNP 
Sbjct: 8   VLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPF 67

Query: 182 NEDHGAPDAEIRHVGDLGNIKS 247
            + HG P +EIRHVGDLGN+++
Sbjct: 68  GKTHGGPKSEIRHVGDLGNVEA 89



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
 Frame = +1

Query: 229 LGQHKVGWLNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL---TEHPLSKTTGN 399
           LG  + G  + + +I + D +++LYGP+ ++GRS+VVH  +DDLG     +   SK TGN
Sbjct: 84  LGNVEAG-ADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGN 142

Query: 400 SDGRLGCGIIAI 435
           +  R  CG+IA+
Sbjct: 143 AGARAACGVIAL 154


>AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform b protein.
          Length = 158

 Score =  101 bits (242), Expect = 7e-22
 Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
 Frame = +2

Query: 5   IISGD-VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPT 181
           ++ G+ V G I+  Q+S N    I G +  L  GLHGFHVH+YGD++NGC SAG HFNP 
Sbjct: 8   VLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPF 67

Query: 182 NEDHGAPDAEIRHVGDLGNIKS 247
            + HG P +EIRHVGDLGN+++
Sbjct: 68  GKTHGGPKSEIRHVGDLGNVEA 89



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
 Frame = +1

Query: 229 LGQHKVGWLNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL---TEHPLSKTTGN 399
           LG  + G  + + +I + D +++LYGP+ ++GRS+VVH  +DDLG     +   SK TGN
Sbjct: 84  LGNVEAG-ADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGN 142

Query: 400 SDGRLGCGIIAI 435
           +  R  CG+IA+
Sbjct: 143 AGARAACGVIAL 154


>AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform a protein.
          Length = 180

 Score =  101 bits (242), Expect = 7e-22
 Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
 Frame = +2

Query: 5   IISGD-VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPT 181
           ++ G+ V G I+  Q+S N    I G +  L  GLHGFHVH+YGD++NGC SAG HFNP 
Sbjct: 30  VLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPF 89

Query: 182 NEDHGAPDAEIRHVGDLGNIKS 247
            + HG P +EIRHVGDLGN+++
Sbjct: 90  GKTHGGPKSEIRHVGDLGNVEA 111



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
 Frame = +1

Query: 229 LGQHKVGWLNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL---TEHPLSKTTGN 399
           LG  + G  + + +I + D +++LYGP+ ++GRS+VVH  +DDLG     +   SK TGN
Sbjct: 106 LGNVEAG-ADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGN 164

Query: 400 SDGRLGCGIIAI 435
           +  R  CG+IA+
Sbjct: 165 AGARAACGVIAL 176


>U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide
           dismutase) protein5 protein.
          Length = 178

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 36/76 (47%), Positives = 53/76 (69%)
 Frame = +2

Query: 20  VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 199
           V G ++  Q++     +  G +  L  GLHGFH+H+YGD+++GCTSAG HFNP   +HG 
Sbjct: 34  VFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPHFNPCKMNHGG 93

Query: 200 PDAEIRHVGDLGNIKS 247
            D+ +RHVGDLGN+++
Sbjct: 94  RDSVVRHVGDLGNVEA 109



 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
 Frame = +1

Query: 229 LGQHKVGWLNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL---TEHPLSKTTGN 399
           LG  + G  + + +I   D V+SL+G + +IGRS+VVH D+DDLG     +   S  TGN
Sbjct: 104 LGNVEAG-ADGVAKIKFSDKVVSLFGANTVIGRSMVVHVDRDDLGQGIDDKAEESLKTGN 162

Query: 400 SDGRLGCGIIAI 435
           +  R  CG+IA+
Sbjct: 163 AGARAACGVIAL 174


>Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical
           protein F55H2.1 protein.
          Length = 176

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 43/83 (51%), Positives = 53/83 (63%)
 Frame = +2

Query: 8   ISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNE 187
           I  ++ G I F Q  +   LK++G +  L  G HGFH+HE GDT NGC SAG H+NP   
Sbjct: 36  IPTELIGTIDFDQSGSF--LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93

Query: 188 DHGAPDAEIRHVGDLGNIKSVGS 256
            HGAPD   RH+GDLGNI+S  S
Sbjct: 94  SHGAPDDSNRHIGDLGNIESPAS 116



 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 28/55 (50%), Positives = 37/55 (67%)
 Frame = +1

Query: 265 TEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGII 429
           T I++ D++ SL G ++IIGRS+V+H   DDLG      SKTTGN+  RL CG I
Sbjct: 119 TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTI 173


>AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 221

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 43/83 (51%), Positives = 53/83 (63%)
 Frame = +2

Query: 8   ISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNE 187
           I  ++ G I F Q  +   LK++G +  L  G HGFH+HE GDT NGC SAG H+NP   
Sbjct: 36  IPTELIGTIDFDQSGSF--LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93

Query: 188 DHGAPDAEIRHVGDLGNIKSVGS 256
            HGAPD   RH+GDLGNI+S  S
Sbjct: 94  SHGAPDDSNRHIGDLGNIESPAS 116



 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 29/57 (50%), Positives = 38/57 (66%)
 Frame = +1

Query: 265 TEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 435
           T I++ D++ SL G ++IIGRS+V+H   DDLG      SKTTGN+  RL CG I I
Sbjct: 119 TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIGI 175


>AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.
          Length = 176

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 43/83 (51%), Positives = 53/83 (63%)
 Frame = +2

Query: 8   ISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNE 187
           I  ++ G I F Q  +   LK++G +  L  G HGFH+HE GDT NGC SAG H+NP   
Sbjct: 36  IPTELIGTIDFDQSGSF--LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93

Query: 188 DHGAPDAEIRHVGDLGNIKSVGS 256
            HGAPD   RH+GDLGNI+S  S
Sbjct: 94  SHGAPDDSNRHIGDLGNIESPAS 116



 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 28/55 (50%), Positives = 37/55 (67%)
 Frame = +1

Query: 265 TEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGII 429
           T I++ D++ SL G ++IIGRS+V+H   DDLG      SKTTGN+  RL CG I
Sbjct: 119 TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTI 173


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
            T01D3.3b protein.
          Length = 1011

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +2

Query: 26   GKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFN 175
            G+  F Q ++   L+I G +  LP G H   +H++GD+S GC+  G  F+
Sbjct: 897  GRFTFSQLTSTA-LRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 945


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +2

Query: 26  GKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFN 175
           G+  F Q ++   L+I G +  LP G H   +H++GD+S GC+  G  F+
Sbjct: 688 GRFTFSQLTSTA-LRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 736


>Z81110-3|CAB03257.1|  323|Caenorhabditis elegans Hypothetical
           protein T01D3.4 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 615 VICFSKL--NSLYE*NSTCKTQSRDD--VICFSKLNLRNDVICFSKLNWLYEYILL 770
           +ICF  L  N L      C  Q ++   V+C SK ++ N +IC   L W+   ILL
Sbjct: 21  LICFIGLFLNGLIFFKFACPKQLKNGFHVLCLSK-SISNSIICIISLFWVGPAILL 75


>U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical
           protein T02G5.12 protein.
          Length = 556

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 256 NSLTEINMMDNVMSLYGPHNIIGR 327
           N L++ N+  N++S+YG  N IGR
Sbjct: 378 NILSDNNVSGNILSVYGTANTIGR 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,644,832
Number of Sequences: 27780
Number of extensions: 427296
Number of successful extensions: 936
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)