Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120557.Seq
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    26   0.39 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   1.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 483 RRILLVKRVKAMTSFTYGNYSASQTAVRIAGCFAQRMLGKAQIVFV 346
           + ++LVK+VK +    YG+   S T V    C   + L   +I ++
Sbjct: 11  QNVVLVKKVKIVLLIFYGSIMFSMTQVNKEECDYYQNLNLGEIYYI 56


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 519 SKLNLRNDVICFSKLNWLYEYNST 590
           + +NL   ++C S L+W   +NST
Sbjct: 287 ASVNLICHILCMSDLHWQLPHNST 310


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 564 NWLYEYNSTCKT*SRDDVICFSKLNSL 644
           NW+ + NS     +R+ + CF  +N L
Sbjct: 545 NWMLDLNSGLNKITRNSLDCFFTMNDL 571


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 564 NWLYEYNSTCKT*SRDDVICFSKLNSL 644
           NW+ + NS     +R+ + CF  +N L
Sbjct: 545 NWMLDLNSGLNKITRNSLDCFFTMNDL 571


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 204 SGAPWSSLVGLKCSPADVQPLLVSPYSCT*KPCKPRG 94
           SG   S  +G+K  PA+ + L  S  S    P  P G
Sbjct: 290 SGGIRSDQMGVKIEPAEAESLSTSGSSGILTPVSPYG 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,294
Number of Sequences: 438
Number of extensions: 4973
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)