Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120557.Seq
         (865 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla...    92   5e-19
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ...    89   3e-18
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z...    89   5e-18
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ...    44   2e-04
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN...    28   7.0  
At3g17640.1 68416.m02253 leucine-rich repeat family protein cont...    28   7.0  
At1g76670.1 68414.m08921 transporter-related low similarity to g...    28   7.0  
At2g47500.1 68415.m05929 kinesin motor protein-related                 28   9.2  

>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
           (SODCP) / copper/zinc superoxide dismutase (CSD2)
           identical to GP:3273753:AF061519
          Length = 216

 Score = 91.9 bits (218), Expect = 5e-19
 Identities = 39/79 (49%), Positives = 51/79 (64%)
 Frame = +2

Query: 11  SGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNED 190
           + DV G +   Q+ +  P  ++  +  L  G HGFH+HE+GDT+NGC S G HFNP N  
Sbjct: 74  TSDVEGVVTLTQDDSG-PTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMT 132

Query: 191 HGAPDAEIRHVGDLGNIKS 247
           HGAP+ E RH GDLGNI +
Sbjct: 133 HGAPEDECRHAGDLGNINA 151



 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 29/60 (48%), Positives = 42/60 (70%)
 Frame = +1

Query: 256 NSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 435
           + + E  ++DN + L GP++++GR+ VVH  KDDLG   H LS TTGN+ GRL CG+I +
Sbjct: 154 DGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGL 213


>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
           copper/zinc superoxide dismutase (CSD1) identical to
           SWISS-PROT: P24704
          Length = 152

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 42/77 (54%), Positives = 49/77 (63%)
 Frame = +2

Query: 11  SGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNED 190
           S  V G I+F QE  +    +SG +  L  GLHGFHVH  GDT+NGC S G HFNP  + 
Sbjct: 11  SEGVTGTIFFTQEG-DGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKT 69

Query: 191 HGAPDAEIRHVGDLGNI 241
           HGAP+   RH GDLGNI
Sbjct: 70  HGAPEDANRHAGDLGNI 86



 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 32/69 (46%), Positives = 43/69 (62%)
 Frame = +1

Query: 229 LGQHKVGWLNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDG 408
           LG   VG   + T   + D  + L GP++I+GR++VVH D DDLG   H LS  TGN+ G
Sbjct: 83  LGNITVGDDGTAT-FTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGG 141

Query: 409 RLGCGIIAI 435
           R+ CGII +
Sbjct: 142 RVACGIIGL 150


>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
           superoxide dismutase (CSD3) identical to copper/zinc
           superoxide dismutase GI:3273755
          Length = 164

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
 Frame = +2

Query: 5   IISGD--VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNP 178
           +I+GD  V G + F Q+ +     ++G +  L  G HGFH+H +GDT+NGC S G HFNP
Sbjct: 13  LIAGDNNVRGCLQFVQDISGTT-HVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNP 71

Query: 179 TNEDHGAPDAEIRHVGDLGNI 241
            N  HG P+ E RH GDLGNI
Sbjct: 72  LNRVHGPPNEEERHAGDLGNI 92



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 30/60 (50%), Positives = 42/60 (70%)
 Frame = +1

Query: 256 NSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 435
           N + EI + D  + L G ++I+GR++VVH D DDLG   H LSK+TGN+  R+GCGII +
Sbjct: 97  NGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGL 156


>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
           putative similar to copper chaperone for superoxide
           dismutase [Homo sapiens] gi|2431868|gb|AAC51764
          Length = 254

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 24/77 (31%), Positives = 37/77 (48%)
 Frame = +2

Query: 17  DVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHG 196
           D+ G + F Q S     +I      L  G H + ++EYGD +NG  S G  +NP  +  G
Sbjct: 106 DIFGVVRFAQVSMELA-RIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTG 164

Query: 197 APDAEIRHVGDLGNIKS 247
                   +GDLG +++
Sbjct: 165 T-----EPLGDLGTLEA 176


>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
           topoisomerase II / DNA gyrase (TOP2) identical to
           SP|P30182 DNA topoisomerase II (EC 5.99.1.3)
           {Arabidopsis thaliana}
          Length = 1473

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -2

Query: 267 GQRIEPTDFMLPKSPTCLISAS---GAPWSSLV 178
           GQRIEPT +M P  PT L++ +   G  WS+ +
Sbjct: 822 GQRIEPTWYM-PIIPTVLVNGAEGIGTGWSTFI 853


>At3g17640.1 68416.m02253 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; contains some similarity to
           receptor-like protein kinase INRPK1 [Ipomoea nil]
           gi|14495542|gb|AAB36558
          Length = 396

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 285 VHHVYFGQRIEPTDFMLPKSPTCLISASGAPWSSLVGLKCSPADVQPLLVSPYS 124
           + H YF +    +   LP S +  +S +      +VGL   P +V PLL  P S
Sbjct: 331 LQHNYFTRFPWNSGLQLPDSVSLCLSYNCMETDPVVGLSTCPIEVAPLLSRPAS 384


>At1g76670.1 68414.m08921 transporter-related low similarity to
           glucose-6-phosphate/phosphate-translocator precursor
           [Solanum tuberosum] GI:2997593, GDP-Mannose transporter
           [Arabidopsis thaliana] GI:15487237; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 347

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 326 LPIILCGPYKDITLSIMFISVSELSQPTLCC 234
           + +++CGP+ D  LS  FIS  +++   + C
Sbjct: 200 ISLLICGPFVDYLLSGKFISTYQMTYGAIFC 230


>At2g47500.1 68415.m05929 kinesin motor protein-related 
          Length = 974

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 342 HGQRRSGPYRASVEQNNRQF*RPFGMR 422
           H + R+ P  ++  QNNR F +P G R
Sbjct: 275 HAKVRAAPRESTSSQNNRSFLKPLGER 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,145,284
Number of Sequences: 28952
Number of extensions: 382119
Number of successful extensions: 810
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)