Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120556.Seq
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    27   3.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.1  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   4.1  
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po...    26   7.2  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   7.2  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  

>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -1

Query: 591 KIRCKIAPSSFSTAA*QNLDCFCLAYTPIVDDETEKVHGVPYGGKRVSKTLGVARTQIEF 412
           K R    P S ++ A  N+D   L    IVD ET+++ GV   G    + +G A   +E+
Sbjct: 417 KYRIGTFPFSANSRAKTNMDADGLVKV-IVDAETDRLLGVHMIGPMAGELIGEATLALEY 475


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/25 (36%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 439  KSFTYTFTTIWDTMH-FLSLIIDDR 510
            KS++++F  IW T H  L++++++R
Sbjct: 3737 KSYSFSFNFIWSTFHQMLNVVLENR 3761


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 533 SRFCHAAVENDEGAILQRIFHTTVRHVPRSLYERQRFPHLPH 658
           +RF HA+       +L       V H  + LY    +P LPH
Sbjct: 437 NRFTHASPNRSSCVVLMDELDQLVTHNQKVLYNFFNWPSLPH 478


>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 29/91 (31%), Positives = 44/91 (48%)
 Frame = +1

Query: 148 TADAAFFSLQRQLFVVFVSSHRPFASF*IGAPYQIVSSQATYLYHFACLMKYKDI*KYEV 327
           T+DA+ FSL  Q     +++  P A   I  P   V    T LY  A  +K+  I KYE 
Sbjct: 54  TSDASLFSLVPQSPSEHLTTLEPIAKVTIRDPSMQVQRPYTPLYLDANELKF-FIRKYEE 112

Query: 328 QQLIEWAINASPDMDLQQFRIEFMDKTTELN 420
             +  + I++  + D  + R  F  KTT+L+
Sbjct: 113 GPVSSY-IHSKKEGDTIELRGPF--KTTKLD 140


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -2

Query: 662 LNVVNEETFDVHIMIAAHGAL*YEKYVVK 576
           LN+V E+T D++I +AA  +L ++ Y+ K
Sbjct: 39  LNIVAEDTVDINIKLAA--SLYFKNYIKK 65


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +1

Query: 283 FACLMKYKDI*KYEVQQLIEWAINASPDMDLQQ--FRIEFMDKTT--ELNLRSCHPKSFT 450
           F  L +  DI  YE+   I+ AIN+S    L+    R+   D TT  E  L +  P+ F 
Sbjct: 567 FNFLERTSDISAYEIACAIKTAINSSKVKLLRSALARLSLFDSTTSREALLLAFVPEDFD 626

Query: 451 YTFTTI 468
             F T+
Sbjct: 627 SLFKTL 632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,570
Number of Sequences: 5004
Number of extensions: 70830
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)