Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120556.Seq
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0539 + 3952039-3952219,3952295-3952984,3953115-3953191,395...    36   0.037
05_03_0498 - 14720989-14722119,14722225-14722839                       29   3.2  
02_05_0633 - 30492742-30492987,30493082-30494194                       29   3.2  
12_02_0868 - 23839077-23839382,23839626-23839935,23840003-238401...    29   4.3  
04_03_0302 + 14102477-14102963,14103011-14103057,14103432-14104073     29   4.3  
06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821...    29   5.7  
02_04_0343 - 22166148-22166318,22166422-22166465,22166563-221666...    28   7.5  

>01_01_0539 +
           3952039-3952219,3952295-3952984,3953115-3953191,
           3953356-3953931
          Length = 507

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +3

Query: 360 PRHGLATVSHRIYGQNHRTQ---FAFVPPQEFYLHVYHHMGHH--ALSQSHHR 503
           P +        IYG +  TQ    A V  QE+Y H +HH+ HH  A +  HHR
Sbjct: 349 PEYATQAAGPAIYGAHPATQPHYTAAVAAQEYYHHHHHHLQHHPAAAALVHHR 401


>05_03_0498 - 14720989-14722119,14722225-14722839
          Length = 581

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 398 WTKPQNSICVRATPRVLLTRLPPYGTPCTFSVSSSTIGVYARQKQSRFCHAAVENDE 568
           W +   +  ++ATPR   T +  +G P    V    + V+A  +++RF H   + D+
Sbjct: 150 WVEINGAFRLKATPRGA-TAVHVHGAPAGVDVKLMDLRVFAADRKARFRHLKEKTDK 205


>02_05_0633 - 30492742-30492987,30493082-30494194
          Length = 452

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 176 CNEKKAASAVSWRLAKRSCCICVRRRPQRRC 84
           C+ +KAA AV  + A R+C  C+RRR +  C
Sbjct: 3   CSSEKAAGAVGGKAA-RACDSCLRRRARWYC 32


>12_02_0868 -
           23839077-23839382,23839626-23839935,23840003-23840128,
           23840202-23840436,23840649-23840684,23841033-23841162,
           23841318-23841410,23841556-23841678,23841769-23841835,
           23841937-23842028,23842136-23842291
          Length = 557

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
 Frame = -1

Query: 522 LAYTPIVDDETEKVHGVPYGGKRVSKTLGVARTQIEFCGFVHKFYAKLLQVHVGGCV--- 352
           L Y+     E +   G P G   + + L   R  + F G VH  Y +   V+ G CV   
Sbjct: 405 LGYSSCSYYEEQGTFGEPMGRDTIEELLQKYRVDLAFYGHVHS-YERTCPVYQGQCVVNA 463

Query: 351 ----NGPF 340
               NGPF
Sbjct: 464 SDHYNGPF 471


>04_03_0302 + 14102477-14102963,14103011-14103057,14103432-14104073
          Length = 391

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 197 SFRLIDLLRASKSAHLTKLCLRKQL 271
           SF L DLLRA  +AH     LR+QL
Sbjct: 15  SFELFDLLRAENAAHPALQALRQQL 39


>06_01_1195 +
           10280864-10280979,10281024-10281115,10281211-10282156,
           10282378-10283075,10283140-10284068
          Length = 926

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 FCELLNRRTLPNCVFASNLLIPFCVFDEIQRHLKI 320
           F EL+NR  +  C F S+ ++  CV  +I R + I
Sbjct: 424 FDELINRSMIQPCRFYSHGVVQSCVLHDIMRDIAI 458


>02_04_0343 -
           22166148-22166318,22166422-22166465,22166563-22166626,
           22166729-22167109,22167296-22167475,22167661-22167790,
           22167844-22167946,22168060-22168093,22168216-22168300,
           22168389-22168453,22168592-22168690,22168960-22169025,
           22169200-22169439
          Length = 553

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 576 FYNVFFILQCAMCRDHYMNVKGFLIYHIELIEIALDKEKYGTDITFVDSYQQETAGADAA 755
           F   F  L+ A C D   N+KG     + LI +++    Y  D   +D    +T+G    
Sbjct: 247 FVRWFPWLKTAACCDACANLKGAFFTAVLLIVVSMTVTMYLADEMPLDKQDVDTSGGGGC 306

Query: 756 AV 761
           AV
Sbjct: 307 AV 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,156,829
Number of Sequences: 37544
Number of extensions: 465921
Number of successful extensions: 1307
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)