Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120556.Seq
(798 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_41882| Best HMM Match : Amelogenin (HMM E-Value=2) 30 1.9
SB_45760| Best HMM Match : Drf_FH1 (HMM E-Value=3.6) 30 2.5
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_51583| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.5) 29 4.4
SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_56756| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 32.3 bits (70), Expect = 0.47
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = -2
Query: 440 LGWHERKLSSVVLSINSMRNCCKSMSGDALMAHSINCCTSYF*MSLYFIKHAKWY 276
LGWH RK + S S AH CC+ F S F+KH W+
Sbjct: 75 LGWHGRKTPNK--HETQEVKATSSPSTTEPFAHQCTCCSKKFNNSSRFLKHMTWH 127
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +3
Query: 366 HGLATVSHRIYGQNHRTQFAFVPPQEFYLHVYHHMGHHALSQSHH 500
H L HR Y +H Q + H +HH HH Q HH
Sbjct: 248 HKLKNPRHR-YHHHHHHHHQHNHHQHHHHHHHHHHNHHHHHQQHH 291
>SB_41882| Best HMM Match : Amelogenin (HMM E-Value=2)
Length = 264
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Frame = +3
Query: 219 CELLNRRTLPNCVFASNLLIPFCVFDEIQRHLKIRGAAVDRMGH*RIPRHGLATVSHRI- 395
C++ + TLP+ + LI + R++ ++ G+ +P+H L T+ H I
Sbjct: 26 CQIDWKSTLPSILEILLNLINLAF--PVMRNITQNAVYINSPGYFPVPQHDLLTMHHPIP 83
Query: 396 YGQNHRTQFAFVPPQEFYLHVYHHMG--------HHALSQSHH 500
NH T +P + ++ ++H + H A++ HH
Sbjct: 84 VNNNHVTIHHPIPVNQHHVTIHHSIPVYQHHVTMHQAINVEHH 126
>SB_45760| Best HMM Match : Drf_FH1 (HMM E-Value=3.6)
Length = 173
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 216 FCELLNRRTLPNCVFASNLLIPFCVF 293
+C + T+P C F + IP+C F
Sbjct: 68 YCTITGSSTIPYCTFTGSSTIPYCTF 93
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 216 FCELLNRRTLPNCVFASNLLIPFCVF 293
+C + T+P C F + IP+C F
Sbjct: 101 YCTITGSSTIPYCTFTGSSTIPYCTF 126
Score = 29.1 bits (62), Expect = 4.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 216 FCELLNRRTLPNCVFASNLLIPFCVF 293
+C T+P C F + IP+C F
Sbjct: 35 YCTFTGSSTIPYCTFTGSSTIPYCTF 60
Score = 28.7 bits (61), Expect = 5.8
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 216 FCELLNRRTLPNCVFASNLLIPFCVF 293
+C T+P C F + IP+C F
Sbjct: 24 YCTFTGPSTIPYCTFTGSSTIPYCTF 49
>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2835
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 399 GQNHRT-QFAFVPPQEFYLHVYHHMGHHALSQSHHRR*VYTRDKSSLDFVMQQLKTMKVL 575
GQ HRT A E + H+++H H ++ H V+TR S +Q+L L
Sbjct: 1790 GQIHRTISVASKGDIETFSHLFYHASHKNITDGHLWFSVFTRPAKSRFTRVQRLSCCLTL 1849
Query: 576 FY 581
Y
Sbjct: 1850 LY 1851
>SB_51583| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.5)
Length = 55
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +2
Query: 371 TCNS--FA*NLWTKPQNSICVRATP 439
TC F ++W+ PQN+ICVR P
Sbjct: 17 TCKKGLFKMSVWSNPQNNICVRECP 41
>SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 545 HAAVENDEGAILQRIFHTTVRH 610
HA ++ D+G I + F TTVRH
Sbjct: 326 HAKIKRDKGLISNKEFKTTVRH 347
>SB_56756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 679 STRKNTGQTLRLSIRTNRKPPVRTLRLCEQYAHEK 783
S R NT ++ L RT R+P RT+ CE+ H K
Sbjct: 33 SHRNNTDLSITLEKRT-REPSERTINSCEKQEHLK 66
>SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 387 HRIYGQNHRTQFAFVPPQEF-YLHVYHHMGHHALSQSH 497
H + NH +AF F Y HH H+A + +H
Sbjct: 26 HYAFTSNHTFHYAFTSNHTFHYTFTSHHTFHYAFTSNH 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,190,057
Number of Sequences: 59808
Number of extensions: 572057
Number of successful extensions: 1473
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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