Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120556.Seq
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical ...    30   2.2  
U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z71186-2|CAA94915.1|  203|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine re...    28   8.9  

>AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical
           protein Y67D8C.2 protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +3

Query: 546 MQQLKTMKVLFYNVFFILQCAMCR----DHYMNVKGFLIYHIELIEIALDKEKYGTDI 707
           M++LK   ++    +++ +  +CR    DHY  +K F+I ++  +E   +KE Y   I
Sbjct: 1   MKRLKLRTLISNEYYYVAEAEVCRAPLADHYKVLKNFIISYVRKLE--ENKELYSAGI 56


>U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical
           protein R07G3.6 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 110 VRRRPQRRCTLAPTRTPTSLLF 45
           +RR+PQ   TL PT TPT  LF
Sbjct: 159 LRRKPQSIPTLPPTTTPTPRLF 180


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 348 H*RIPRHGLATVSHRIYGQNHRTQFAFVPPQEFYLHVYHHMGHHALSQSHH 500
           H     H    V HR +G++H T  +     E   H  HH G H  + +HH
Sbjct: 390 HEHAAHHDEHGVHHRHHGEHHGTHHSPAHHGEHGTHHGHH-GEHHHAPAHH 439


>Z71186-2|CAA94915.1|  203|Caenorhabditis elegans Hypothetical
           protein F23D12.3 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -2

Query: 569 LHRFQLLHDKI*TAFVSRIHLSSMMRLRKCMVSHMVV 459
           LH FQL++ ++ +  +S IHL  M ++   +VS +++
Sbjct: 24  LHLFQLVYKRVWSETLSFIHLKMMNKITVILVSLLIL 60


>AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine
           receptor, class r protein8 protein.
          Length = 428

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 570 VLFYNVFFILQCAMCRDHYMNVKGFLIYHIELIEIALDKEKYGTDITFVDSYQQ 731
           ++FYNVF +    + ++H       LI + E  E + D   Y T    +D +Q+
Sbjct: 330 IIFYNVFVMFPAIILQEHLKTTTRILINNDE-FECSKDPIVYQTYRIMIDRFQK 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,271,949
Number of Sequences: 27780
Number of extensions: 422590
Number of successful extensions: 1166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)