Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120556.Seq
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28080.1 68417.m04027 expressed protein                             29   2.7  
At3g14360.1 68416.m01817 lipase class 3 family protein low simil...    29   2.7  
At1g44020.1 68414.m05078 DC1 domain-containing protein contains ...    29   4.7  
At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ bo...    28   6.2  

>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 485 FSVSSSTIGVYARQKQSRFCHAAVENDEGAILQRIFHTTVRHVPRSLYERQRFPHLPH 658
           F+V +S  G Y   KQ   CH+ VE  +   + R F      + ++  E  +F +LP+
Sbjct: 55  FTVVASRTGFYPPGKQQLLCHSLVELLQQ--ISRPFDAAYDALMKAFIEHNKFGNLPY 110


>At3g14360.1 68416.m01817 lipase class 3 family protein low
           similarity to Chain A, Lipase Ii From Rhizopus Niveus
           GI:1942798; contains Pfam profile PF01764: Lipase
          Length = 518

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 513 TPIVDDETEKVHGVPYGGKRVSKTLGVARTQIEFCGFVHKFYAKLLQVHVG 361
           T  +D+E E    V      V K + + RT +EF GFV  F+  L   + G
Sbjct: 58  TITIDEEAEDHRWVIVVSILVRKIIRLLRTPMEFTGFVVDFFLNLFSANGG 108


>At1g44020.1 68414.m05078 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 577

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 474 HHALSQSHHRR*VYTRDKSSLDFVMQQLKTMKVLFYNVFFILQC 605
           HH   Q+HH R    RD+   +  + Q   M + F N F  +QC
Sbjct: 529 HHFSHQNHHLRLDENRDRIYDENKLCQACIMPIYFGNFFSCMQC 572


>At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ
           boundaries domain protein 1 (LBD1) identical to
           SP|Q9LQR0 LOB domain protein 1 {Arabidopsis thaliana}
          Length = 190

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -2

Query: 206 DETNTTNSCLCNEKKAASAVSWRLAKRSCCIC--VRRRPQRRCTLAPTRTPT 57
           D +  T   + +      ++S R+    C  C  +RRR   RC LAP   PT
Sbjct: 6   DASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPT 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,644,722
Number of Sequences: 28952
Number of extensions: 369261
Number of successful extensions: 1086
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)