Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120555.Seq
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   7.0  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   9.3  

>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 959

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 648  KTHFKANLFNKYITVKVLQNCRRQYNTAAA 559
            K+H+ AN+F+ +I     Q  + Q  + AA
Sbjct: 914  KSHYNANIFHDFINWGAQQRLKHQQTSTAA 943


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 919

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +1

Query: 547  LPTWRRSRVVLTTAILQNLYCDIFIK*VCFKMSFFTNLRRVNK--LYPNQASFLADNTRL 720
            +P+W+ S  VL   IL  ++C IF     FK    T++  V +  +Y      +   T  
Sbjct: 820  IPSWQLSGAVLAVDILATMFC-IF---GWFKGGHQTSIVAVLRIWMYSFGIFCIMAGTYY 875

Query: 721  LTSTPAGFTNVLNAQ 765
            + S  AGF  ++N +
Sbjct: 876  ILSESAGFDRMMNGK 890


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,050
Number of Sequences: 5004
Number of extensions: 50080
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)