Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120555.Seq
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10326| Best HMM Match : CBM_14 (HMM E-Value=5.3e-15)                33   0.20 
SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)                30   1.8  
SB_41487| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_27164| Best HMM Match : CBM_14 (HMM E-Value=1.1e-05)                29   3.2  
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_10326| Best HMM Match : CBM_14 (HMM E-Value=5.3e-15)
          Length = 134

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -2

Query: 176 CVNRPIGVHFPHPTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 39
           C ++P G + P  T C  +Y C      +   C  G  +DP + +C
Sbjct: 22  CADKPHGAYLPDSTSCQHYYHCTW-GKAVRKDCGPGRVWDPRITNC 66


>SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1147

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 113 CVGINHRLELLCSEGFEFDPNVKDCVPISD 24
           C   N   + +C+ GFE   ++KDCV I++
Sbjct: 229 CENFNGGYQCICNRGFESTADMKDCVDINE 258


>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
          Length = 480

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 176 CVNRPIGVHFPHPTKCNAFYMCV-GINHRLELLCSEGFEFDPNVKDC 39
           C ++  G ++ HP+KC+ +  C  GI H  E+ C  G  ++   K+C
Sbjct: 336 CQDKADG-NYAHPSKCDMYITCSNGIAH--EMPCPAGLNWNDVTKEC 379


>SB_41487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/77 (24%), Positives = 33/77 (42%)
 Frame = -3

Query: 541 NLLLALDFGREAHLLCQSFRRLHYLLCKVLQCMKRL*HYYNFFLNIDAFHGAR*YG*YLS 362
           +L + L+  +   +LC+      + L K L   K   HY    L++    G   Y  +L 
Sbjct: 68  SLNVRLNLAKNERILCELLSVDRFNLSKYLISDKEFSHYGKNILHLKQGRGKHVYRLFLD 127

Query: 361 IV*SLKLYTVSINMFKP 311
            +  L +Y  S+ +F P
Sbjct: 128 AMRRLSMYQRSVRLFLP 144


>SB_27164| Best HMM Match : CBM_14 (HMM E-Value=1.1e-05)
          Length = 85

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 176 CVNRPIGVHFPHPTKCNAFYMCVGINHRLELLCSE 72
           C  +  G H+  P  C  FY C G +     +CS+
Sbjct: 29  CKEKDAG-HYTDPADCAKFYQCDGFHRTFHRMCSD 62


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -2

Query: 176 CVNRPIGVHFPHPTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 39
           C ++P G ++  P  C+ FY C   +      CS G ++      C
Sbjct: 783 CKDKPNG-YYADPRDCSRFYQCDAFHRAFLHRCSPGLKWSITKTTC 827


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,968,831
Number of Sequences: 59808
Number of extensions: 354389
Number of successful extensions: 885
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)