Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120554.Seq
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    30   0.46 
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    30   0.46 
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    29   0.60 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   1.1  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   5.6  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   9.8  

>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 289 YILTHLGLKPLFRLLKSSDTDTVADTITTLIYMYNEKTKTEITDQDV-INMMLN 447
           YI+   GL  L +L     + + A  I  +IY Y     TE+  + V  +++LN
Sbjct: 553 YIIVQYGLFALTKLSARLGSSSTASRIDKIIYSYKRNKNTEVQQRSVEFHLILN 606


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = +3

Query: 630 SFSNTAFKAGDKIRIQKTLTQKDLDAFSNLTGDHNYLHQNSGNVSQLYME 779
           S SNT+ K    + +Q  +++  ++ F+ LT D NY+ QN+G +++   E
Sbjct: 858 SISNTSGKVN--VILQSYISRAHVEDFT-LTSDTNYVAQNAGRITRALFE 904


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 429 YKYDVKFENYAGFEDRQFIYTFSTRCVKTS*IVT*TYFIMNKMLSNRFPYIIVNNKN 599
           + YD    N + F+D Q +  FST   +T      TY +MN+  S+      VN +N
Sbjct: 77  FPYDQTLSNSSSFDDHQSLLPFSTEVRRTP-----TYSVMNETDSSSTSVEDVNKEN 128


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 235 KVCHCGCCNLCLDPLNA 285
           K CH G C  C +P+NA
Sbjct: 355 KRCHSGLCGACFEPINA 371


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 5   RAHLQKRTPKDGTDREAYLSLLVDEYLHSSSY--EAKLQVLANLANF--AYDPVNYSYIR 172
           +A    R P D T  E  ++     +++   +  EA+ QV     +F  +Y+  ++SY+ 
Sbjct: 439 KAPENNRDPIDFTKYEQKITAFKHAHIYDKIFLEEARKQVFHCFLSFIDSYNEEDFSYLS 498

Query: 173 DVGVLD 190
           D+G+ +
Sbjct: 499 DIGITE 504


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -3

Query: 367 LYQLQCLYHLTSI----IETKVLIPSEL-KYSLHSVDLNTNCSTR 248
           LY LQCL  LTS     +  K ++ S L K   H+   +TN  +R
Sbjct: 193 LYHLQCLSPLTSFFTSCVTPKTILESPLRKQGSHNWKTSTNSQSR 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,094
Number of Sequences: 5004
Number of extensions: 68919
Number of successful extensions: 214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)