Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120554.Seq
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0033 - 19437746-19437916,19438063-19438145,19438266-194383...    58   1e-08
08_02_0530 + 18244933-18245217,18245309-18245383,18246176-182462...    31   1.1  
05_01_0579 - 5196888-5196970,5197063-5197621,5197704-5197786,519...    31   1.5  
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425...    29   5.9  

>11_06_0033 -
           19437746-19437916,19438063-19438145,19438266-19438359,
           19438478-19438551,19438825-19438861,19440767-19440844,
           19440927-19441022,19441719-19441815,19441910-19442015,
           19442136-19442208,19442537-19442680,19443241-19443681
          Length = 497

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 26/62 (41%), Positives = 43/62 (69%)
 Frame = +2

Query: 68  LVDEYLHSSSYEAKLQVLANLANFAYDPVNYSYIRDVGVLDIFLYVLKNETIGRLIRYAI 247
           LV ++  ++  E+K +++ANLANFAYDP NY+++R + +L++FL  +  E   RLI + I
Sbjct: 347 LVTQFQEATDEESKERIVANLANFAYDPYNYTFMRQLNILELFLDCI-TEPNERLIEFGI 405

Query: 248 AG 253
            G
Sbjct: 406 GG 407



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +1

Query: 250 GCCNLCLDPLNADYILTHLGLKPL-FRLLKSSDTDTVADTITTLIYMYNEKTKTEITDQD 426
           G CN C DP NA  ++TH G  PL  + L S   +TV   +  L Y+ N  TK +I   +
Sbjct: 407 GICNSCADPANAS-VITHCGGIPLVIQCLSSPVKNTVNYALGALYYLCNPSTKKDILKPE 465

Query: 427 VINMMLNLKTTQDLR--IVNLSTLFL 498
           V+  +       D      NL+  FL
Sbjct: 466 VLKAVREYAVAGDANTSFRNLANAFL 491


>08_02_0530 +
           18244933-18245217,18245309-18245383,18246176-18246292,
           18246503-18246631,18246726-18246785,18247271-18247441,
           18247596-18247689,18247860-18247951,18248071-18248220,
           18248407-18248465,18249735-18249864
          Length = 453

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 179 GVLDIFLYVLKNETIGRLIRYAIAGAAICV 268
           G LD+FL V++ E  GRL R   AG A+ V
Sbjct: 191 GTLDVFLKVVRQEGFGRLWRGTNAGLALAV 220


>05_01_0579 -
           5196888-5196970,5197063-5197621,5197704-5197786,
           5199165-5199279,5199376-5199473,5200136-5200183,
           5200313-5200415,5201003-5201119,5201254-5201430,
           5202563-5202593,5203492-5203604,5203824-5204036
          Length = 579

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 636 SNTAFKAGDKIRIQKTLTQKDLDAFSNLTGDHNYLH 743
           S+   K GD +R ++  T  +++A++ ++GD N +H
Sbjct: 28  SSLVLKVGDTLRERRRFTDGEVEAYAAVSGDRNPVH 63


>06_03_0791 -
           24641350-24641418,24641684-24641965,24642318-24642537,
           24642657-24642776,24643056-24643132,24643220-24643339,
           24644121-24644186,24644265-24644479,24645450-24645582,
           24646562-24646708,24647301-24647596,24648222-24648319,
           24648425-24648471,24649340-24649449,24649663-24649735,
           24650795-24650899
          Length = 725

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +3

Query: 600 YQKICKIHTTSFSNTAFKAGDKIRIQKTLTQKDLDAFSNLTGDHNYLHQN 749
           Y+++C +     +N  F     +R+Q+ LT       SN   ++ +L  N
Sbjct: 138 YEELCILGVAEDANECFSEATALRLQQELTSTSNVEKSNFVNENRFLSSN 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,721,351
Number of Sequences: 37544
Number of extensions: 374029
Number of successful extensions: 868
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)