Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120554.Seq
         (822 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37290.1 68418.m04479 armadillo/beta-catenin repeat family pr...    68   7e-12
At3g20950.1 68416.m02648 cytochrome P450 family protein similar ...    35   0.057
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ...    31   0.92 
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ...    31   0.92 
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom...    29   4.9  
At5g41310.1 68418.m05020 kinesin motor protein-related                 28   6.5  
At4g27940.1 68417.m04009 mitochondrial substrate carrier family ...    28   6.5  
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ...    28   8.6  

>At5g37290.1 68418.m04479 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 180

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 32/79 (40%), Positives = 52/79 (65%)
 Frame = +2

Query: 17  QKRTPKDGTDREAYLSLLVDEYLHSSSYEAKLQVLANLANFAYDPVNYSYIRDVGVLDIF 196
           ++RT K GT R  YL  LV ++ +++  E K +++ANLANFAYDP NY+ +R + VL++F
Sbjct: 9   EERTGKHGTPRLQYLQELVSQFQNATDEETKERIVANLANFAYDPYNYTILRQLNVLELF 68

Query: 197 LYVLKNETIGRLIRYAIAG 253
           +  +  E   +L+ + I G
Sbjct: 69  VDCI-TEPNEKLVEFGIGG 86



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
 Frame = +1

Query: 250 GCCNLCLDPLNADYILTHLGLKPLFRLLKSSDTDTVADTITTLIYM--YNEKTKTEITDQ 423
           G CN C +P N   I+   G+  + + L S   +TV   +  L YM  YN  T+ EI   
Sbjct: 86  GICNACAEPKNVATIVEADGIPLIIKSLSSPVRNTVNYALGALYYMCDYNRATREEILRP 145

Query: 424 DVINMMLNLKTTQDLRI--VNLSTLFL 498
           +V++++      + + +   NL+  FL
Sbjct: 146 EVVDLIERYAAAESVSVSFSNLAKAFL 172


>At3g20950.1 68416.m02648 cytochrome P450 family protein similar to
           Cytochrome P450 93A3  (P450 CP5) (SP:O81973)  [Glycine
           max];
          Length = 526

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +1

Query: 280 NADYILTHLGLKPLFRLLKSSDTDTVADTIT-TLIYMYNEKTKTEITDQDVINMMLNLKT 456
           NA+Y +T   +K LF  L  + TDT A TI  T+  + N     E   +++ +++ N + 
Sbjct: 295 NAEYKITRNHIKSLFVDLVIAGTDTSAQTIEWTMAELINNPNILERLREEIESVVGNTRL 354

Query: 457 TQDLRIVNLSTLFLQDVLRPAE*LH 531
            Q+  + NL   +LQ V++    LH
Sbjct: 355 VQETDLPNLP--YLQAVVKEGLRLH 377


>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}; contains Pfam profile:
           PF00076 RNA recognition motif (aka RRM, RBD, or RNP
           domain)
          Length = 483

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 573 PYIIVNNKNYQKICKIHTTSFSNTAFKAGDKIRIQKT 683
           PY+ +   NY K CKI T  F+   ++ G   R +KT
Sbjct: 31  PYVRMTKANYDKECKICTRPFTVFRWRPGRDARYKKT 67


>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}, RNA Binding Protein 47
           [Nicotiana plumbaginifolia] GI:9663769; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 481

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 573 PYIIVNNKNYQKICKIHTTSFSNTAFKAGDKIRIQKT 683
           PY+ +   NY K CKI T  F+   ++ G   R +KT
Sbjct: 31  PYVRMTKANYDKECKICTRPFTVFRWRPGRDARYKKT 67


>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to hepatocyte
           growth factor-regulated tyrosine kinase substrate HRS
           isoform 2 [Homo sapiens] GI:9022389; contains Pfam
           profiles PF00790: VHS domain, PF03127: GAT domain
          Length = 671

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 624 TTSFSNTAFKAGDKIRIQKTLTQKDLDAFSNLTGDHNYLHQNSGNVSQ 767
           T++ SN+    G K  +      +DLD F +  G HN    NS N SQ
Sbjct: 607 TSTASNSGVSVGQKPFVPSYRLFEDLDVFGSADGKHN-KPANSSNGSQ 653


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = +1

Query: 295 LTHLGLKPLFRLLKSSDTDTVADTITTLIYMYNEKTKTEITDQDVIN-MMLNLKTTQD-L 468
           + +  L  LF L +S     + +    ++ +YNE+ + ++  QDV +  M ++++T+D L
Sbjct: 529 VNYRALNDLFHLTQSRQNSVMYEVGVQMVEIYNEQVR-DLLSQDVPDASMHSVRSTEDVL 587

Query: 469 RIVNLSTL 492
            ++N+  +
Sbjct: 588 ELMNIGLM 595


>At4g27940.1 68417.m04009 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 413

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 179 GVLDIFLYVLKNETIGRLIRYAIAGAAICV 268
           G  D+F  +++ E +GRL R   AG A+ V
Sbjct: 148 GTFDVFTKIIRQEGLGRLWRGTNAGLALAV 177


>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 363

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 573 PYIIVNNKNYQKICKIHTTSFSNTAFKAGDKIRIQKT 683
           PY+ +   +Y K CKI +  F+   ++ G   R +KT
Sbjct: 28  PYMRMTRADYDKECKICSRPFTAFRWRPGRNARFKKT 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,748,973
Number of Sequences: 28952
Number of extensions: 332154
Number of successful extensions: 841
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)