Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120552.Seq
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   110   3e-25
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    27   4.3  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    26   7.5  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   10.0 

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  110 bits (264), Expect = 3e-25
 Identities = 46/67 (68%), Positives = 57/67 (85%)
 Frame = +2

Query: 485 SIFIIIITPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGF 664
           SI +++  PVLAG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P F
Sbjct: 199 SILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAF 258

Query: 665 GIISHII 685
           G++SHII
Sbjct: 259 GVVSHII 265



 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
 Frame = +1

Query: 1   GTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 174
           G+    +IR EL  PGS  L G+ Q+YN  ++AH                  N LVPL++
Sbjct: 35  GSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMI 94

Query: 175 GAPDIAFPRINNIRF 219
           GAPD+A+PR+NN  F
Sbjct: 95  GAPDVAYPRVNNFTF 109



 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 34/86 (39%), Positives = 43/86 (50%)
 Frame = +3

Query: 231 PLPYIINFRRIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXX 410
           P   ++    + E G G G TVYPPLSS  +H G ++DLAI SL L GISS         
Sbjct: 114 PALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIA 173

Query: 411 XXXXXXXXXXSFDQLPLFV*AVGITA 488
                     S  Q+PLF  A+ IT+
Sbjct: 174 TMINMRAPGLSLYQMPLFAWAIMITS 199



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 14/26 (53%), Positives = 23/26 (88%)
 Frame = +1

Query: 754 VIRFIV*AHHIFTVGIDIDTRAYFTS 831
           ++  +V +HH+FTVG+D+DTRAYF++
Sbjct: 288 LLGLMVWSHHLFTVGLDVDTRAYFSA 313


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +1

Query: 478 GLQH-FYYYYHSCFSWSYY 531
           GLQ   +YYY  C SW +Y
Sbjct: 525 GLQWVLFYYYRGCQSWGWY 543


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 481 LQHFYYYYHSCFSWSYY 531
           LQ+ YY    CFS+SYY
Sbjct: 215 LQNLYYDLLLCFSYSYY 231


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 451 NYPYLYEL*GLQHFYYYYHSCFSW 522
           NYPY +E      +YYY  S FSW
Sbjct: 268 NYPY-HEA---YEYYYYIRSSFSW 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,912
Number of Sequences: 5004
Number of extensions: 45349
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)