Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120551.Seq
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    82   1e-16
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    27   2.4  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   3.1  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   4.1  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   7.2  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 45/94 (47%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
 Frame = +3

Query: 231 SFIFFYLHYLHIGRGIYYKSFNLKYV*LXXXXXXXXXXXXXXXX--YVLP*GQISFWGAT 404
           SF F +L YLHIGRG+YY S+                         Y LP  Q+SFWGAT
Sbjct: 87  SFFFIFL-YLHIGRGLYYGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGAT 145

Query: 405 VITNLLSAIPYLGTILVN*I*GGFAVDNATLTRF 506
           VITNLLSA+P++G  LV+ + GGF+V N TL RF
Sbjct: 146 VITNLLSAVPFIGDDLVHLLWGGFSVSNPTLNRF 179



 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 29/55 (52%), Positives = 39/55 (70%)
 Frame = +1

Query: 85  ALCLIIQIITGLFLTIYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGASFFFI 249
           A  L+IQI+ G+ L  +Y  N+++AF  V  I R+VNYG ++R  HANGASFFFI
Sbjct: 37  ACVLVIQIVIGILLACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGASFFFI 91



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +2

Query: 572 HQTGSNNPLGLNRNLDKIPFHPFFTFKD 655
           H  GS+NPLG+  N+D+IP +P++  KD
Sbjct: 202 HTNGSSNPLGVTANMDRIPMNPYYLIKD 229


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 314 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGN 403
           NWN      +SN  +RLC TL  + FL GN
Sbjct: 132 NWNRLLQLDSSNLEYRLCFTL--SAFLSGN 159


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 314 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNLR 469
           N +Y F + N      + L+  S + L  +   + I+CN L R+ +   N +
Sbjct: 45  NTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFK 96


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 708 NPYLLGDPDNFTPANPLGNQFIFNPND 788
           NP  + DP +   A  LG QF+F+P D
Sbjct: 592 NPKDVTDPSHIPSAIDLGFQFLFSPMD 618


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 341 NSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFR 442
           N  C+H++C +    IF  G     +  CN + R
Sbjct: 31  NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,606
Number of Sequences: 5004
Number of extensions: 42077
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)