Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120551.Seq
         (807 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)         55   8e-08
SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)               44   2e-04

>SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)
          Length = 102

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 22/42 (52%), Positives = 33/42 (78%)
 Frame = +1

Query: 130 IYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGASFFFICI 255
           ++Y A++ +AF  V++I R+VNYG ++R  HANGAS FFIC+
Sbjct: 1   MHYCADVSLAFASVDHIMRDVNYGFLLRYAHANGASMFFICL 42



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 237 IFFYLHYLHIGRGIYYKSFN 296
           +FF   Y HIGRG+YY S++
Sbjct: 37  MFFICLYAHIGRGLYYGSYS 56


>SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)
          Length = 135

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 20/48 (41%), Positives = 29/48 (60%)
 Frame = +3

Query: 363 YVLP*GQISFWGATVITNLLSAIPYLGTILVN*I*GGFAVDNATLTRF 506
           Y LP  QI +W   ++T +  AIP +G+ LV  + G  +V  +TLTRF
Sbjct: 64  YSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,658,431
Number of Sequences: 59808
Number of extensions: 264438
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)