Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120551.Seq
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical...    35   0.079

>AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical
           protein Y102A5C.36 protein.
          Length = 213

 Score = 34.7 bits (76), Expect = 0.079
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +2

Query: 224 LMELHFFLFALFTYRTRNLL*IF*LKICM----INWNYNFIYTNSNCFHRLCLTLRSNIF 391
           L  L FF+F   ++     L  F  K C+    + + YNF+Y + NC   + ++L  N+F
Sbjct: 15  LKNLCFFVFPFVSFIILMFLVFFTGKKCLSAFKLIYFYNFLYFSPNCVETIFVSLGRNLF 74

Query: 392 LGGNRNYKSIICNPLFRNYISKLNL 466
           L   R Y  I C   F +++ KL L
Sbjct: 75  LCLQRRY--IHC---FFHFLLKLTL 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,385,001
Number of Sequences: 27780
Number of extensions: 224527
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)