Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120550.Seq
(831 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.26
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 30 0.46
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 2.5
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 27 2.5
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 4.3
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 4.3
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.3
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 4.3
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5... 26 5.7
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 26 5.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 7.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 7.5
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 26 7.5
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.5
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 10.0
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch... 25 10.0
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 25 10.0
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 10.0
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.26
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 139 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPL 252
P PV+N SP +PPK + P +S P T A PL
Sbjct: 972 PLPVSNILSSPTSEPPKDH-PPSAPLSKPVSTSPAAPL 1008
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 29.9 bits (64), Expect = 0.46
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 154 NSPLSPVRQPPKSN--IKPPTRISLPTRTFSANPLDAXSAAAL*VKNQSSTEKMDILCRP 327
N P SP++ PP SN + PP + S + N D + L KN S++ ++ +
Sbjct: 306 NEPKSPIQLPPVSNLPLNPPIQSSNSRLSHDNNSFDPFAYLGLDPKNPSASFPR-VVSQN 364
Query: 328 SLVTN 342
+++TN
Sbjct: 365 NMLTN 369
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +1
Query: 136 LPT---PVANSPLSPVRQPPKSNIKPPTRISLPT 228
LPT P N+P PV P +I+PP ++LPT
Sbjct: 334 LPTSNLPSQNAPARPVE--PSPSIQPPNLLNLPT 365
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 85 NNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIK 201
N + A KT +GR+ S PV +SP PV K + K
Sbjct: 327 NRLEKASKTIPQGRLDSFFKPVPSSPKKPVDTKSKGSAK 365
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 26.6 bits (56), Expect = 4.3
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Frame = +3
Query: 195 HQTTYAHLFAY---AHFFGQSVGRXFSSSIVSKKPVVNRKDGYFVPPEFGNKLESLPAYS 365
H T F Y A + G+S R F+++ +R + + S +YS
Sbjct: 28 HTRTGTSFFMYQKEAFYRGRSSTRQFNNTRSPSGRSASRSSNFSHRSSSRDSFSSNRSYS 87
Query: 366 DKLDFKQERDLRMHFMSDLERNIMK 440
L E LR + +L RN+ K
Sbjct: 88 SSLSRSPEEPLRTILVENLTRNVTK 112
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 91 IFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 249
IF AP+ R S P + +P+S PP + P R LP R+ S P
Sbjct: 21 IFGAPRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLP--RKPLPFRSTSLQP 71
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 133 SLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSA 243
S+P A S SPV++PP P R++ T + S+
Sbjct: 206 SVPAATAASTASPVKKPPPPAPPKPRRLAARTSSNSS 242
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 26.6 bits (56), Expect = 4.3
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +1
Query: 76 FRENNIFD-APKTGGKGRVKSLPTPVANSPLS-PVRQP-PK----SNIK-PPTRISLPTR 231
F E+N F +PK R K+L + L P R P PK S IK PP+R+ LPT
Sbjct: 162 FEEDNFFSVSPK-----RRKNLFEKYGKTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTS 216
Query: 232 TFSANP 249
S +P
Sbjct: 217 ILSKSP 222
>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
Whi5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 521 SSVKYKKTTEQHMSDSRCTTCNYRFKDNTRAWFLYVVVHIEKP 649
+ + YKK + S S ++ + F + W YV H E P
Sbjct: 128 AQLPYKKPVSPYSSSSAVSSTSSSFDRTSPPWLNYVEPHTELP 170
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 136 LPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFS-ANPLDAXSAAAL 276
+P AN + QP +N+ P ++S T+S ++PL + S AL
Sbjct: 405 IPQSDANDSTVNLNQPNYANLTPTPQVSPKRPTYSRSSPLPSASVPAL 452
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 103 PKTGGKGRVKSLPTPVANSPLSPVRQPP-KSNIKPPTRISLPTRTFSANP 249
P T R P A++P P + PP S++ PP + + P ++ + P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 79 RENNIFDAPKT-GGKGRVKSLPTPVANSPLSPVRQP 183
+ N +DA +T G +V P P +PL+ + +P
Sbjct: 152 KHNAFYDASQTFGSTAKVAPAPAPSTKTPLANISKP 187
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 280 VKNQSSTEKMDILCRPSLVTNWKVCPRT 363
V+N SST K +L PS +T V PRT
Sbjct: 38 VENVSSTPKKGVLEDPSTLTPEVVTPRT 65
>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 160 PLSPVRQPPKSNIKPPTRISLPTRTFSANPLD 255
P SP + +S PPT IS+P S+NPL+
Sbjct: 67 PFSPSKIMNRSISVPPTNISVP--QISSNPLN 96
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 10.0
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 321 PPEFGNKLES-LPAYSDKLDFKQERDLRMHFMSDLERNIMKA 443
P G+ + S LP S LDFKQE H MS L ++ K+
Sbjct: 303 PQSTGSSVSSSLPTLS--LDFKQEYSGNNHDMSGLSSSLSKS 342
>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 311
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 793 MYW*KTSLWLIAEVDQIDR 737
+YW S WL+ + DQID+
Sbjct: 36 IYWSCMSFWLLKKKDQIDK 54
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 10.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 525 ELLANFPSCAYLYCLYN 475
E + N+P+C YL C Y+
Sbjct: 75 EAVENWPACDYLICFYS 91
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 303 KDGYFVPPEFGNKLESLPAYSDKLDFKQERDLRMHFM 413
KD Y +P GN + L K+D ++R+ + +FM
Sbjct: 585 KDAYIIPMPSGNSVPELLDLLPKVDLPKDRNFQ-YFM 620
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,512,928
Number of Sequences: 5004
Number of extensions: 75683
Number of successful extensions: 260
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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