Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120550.Seq
(831 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0235 + 32539025-32539886,32540330-32540473,32540595-325407... 32 0.49
09_03_0125 - 12531409-12531442,12531577-12531668,12531747-125323... 31 1.5
05_04_0163 + 18652306-18652839,18653785-18653853,18655139-186552... 30 2.0
07_03_1017 - 23318187-23318348,23318747-23318857,23319859-233199... 30 2.6
06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312 30 2.6
06_03_1150 + 28022633-28023374,28023501-28023565 30 2.6
01_06_0199 - 27467548-27469992 30 2.6
09_06_0268 + 21942591-21942690,21942821-21942904,21943116-219431... 29 3.4
06_03_0905 + 25843547-25844314 29 3.4
02_01_0791 - 5930553-5930802,5931042-5932351 29 3.4
11_01_0066 - 536281-537196,537397-537452 29 4.5
08_02_1227 - 25398063-25398302,25398629-25398790,25399019-253991... 29 4.5
06_03_0661 + 23225514-23227073 29 6.0
05_05_0079 + 22239238-22239395,22240837-22240877,22240955-222410... 29 6.0
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751... 29 6.0
03_03_0254 + 15884149-15884295,15884765-15884803,15884958-158851... 29 6.0
11_06_0610 - 25449085-25453284 28 7.9
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 28 7.9
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 28 7.9
>03_06_0235 +
32539025-32539886,32540330-32540473,32540595-32540747,
32540871-32540986,32541254-32541421,32541534-32541758,
32541884-32542015
Length = 599
Score = 32.3 bits (70), Expect = 0.49
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 100 APKTGGKGRVKSLPTPVANSPLSPVRQPPK 189
AP GG+GR+ + P P +++PL+ +PP+
Sbjct: 40 APDGGGQGRLPAPPPPTSDAPLAVQNKPPE 69
>09_03_0125 -
12531409-12531442,12531577-12531668,12531747-12532337,
12532454-12532789,12532899-12533156,12533867-12533971,
12534625-12534702,12535464-12535542,12535649-12535723,
12535828-12535946,12536042-12537106
Length = 943
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = -3
Query: 166 TAASWRQALAKI*HGPCHRSLARQKCYSLEKNGSL*LLVSTQKS 35
+A+ WR LA++ P S +++ S+++ GS +LVST+K+
Sbjct: 247 SASWWRPVLARMVGRPVSVSGLKKRLVSIDRKGSYTMLVSTRKT 290
>05_04_0163 +
18652306-18652839,18653785-18653853,18655139-18655270,
18655424-18655477,18655570-18655614,18656166-18656305,
18657107-18657232,18657325-18657361
Length = 378
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 294 VNRKDGYFVPPEFGNKLESLPA 359
VNR++ FV + G KLESLPA
Sbjct: 95 VNRREALFVLAQLGRKLESLPA 116
>07_03_1017 -
23318187-23318348,23318747-23318857,23319859-23319964,
23320113-23320153
Length = 139
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = -3
Query: 694 IAFLTAYVYAVRIVQRLFDVNHNIQKPCARVVFESIIASGASRIAHVLLRSLFVFY 527
+ +T + + +++ V HN+++ + +SII G++ + HV+L +LF F+
Sbjct: 78 LVVMTCFPLQMTLIKAQAGVKHNMRR-----MNKSIIQQGSNHVVHVVLFALFCFF 128
>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
Length = 270
Score = 29.9 bits (64), Expect = 2.6
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +1
Query: 100 APKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLDAXSAAAL* 279
AP + G G + P P +SP+SP Q ++ P S P PL + + A
Sbjct: 120 APPSSGSG-FPAFPFPFPSSPVSPPSQASPASPAAPAPPSPPQPKECLTPLLSMMSCADY 178
Query: 280 VKNQSSTEKMDILCR--PSLVTNWKVC 354
+ N S+ C SLV+ +C
Sbjct: 179 LTNSSAQTPPGTCCEGFKSLVSTAPIC 205
>06_03_1150 + 28022633-28023374,28023501-28023565
Length = 268
Score = 29.9 bits (64), Expect = 2.6
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +1
Query: 100 APKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLDAXSAAAL* 279
AP + G G + P P +SP+SP Q ++ P S P PL + + A
Sbjct: 120 APPSSGSG-FPAFPFPFPSSPVSPPSQASPASPAAPAPPSPPQPKECLTPLLSMMSCADY 178
Query: 280 VKNQSSTEKMDILCR--PSLVTNWKVC 354
+ N S+ C SLV+ +C
Sbjct: 179 LTNSSAQTPPGTCCEGFKSLVSTAPIC 205
>01_06_0199 - 27467548-27469992
Length = 814
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 494 YAHDGKFASSSVKYKKTTEQHMSDSRCTTCNYRF 595
Y +D F SS+ ++ Q +SD +C +YRF
Sbjct: 351 YGYDLMFNGSSITFELCRNQCLSDCQCVAFSYRF 384
>09_06_0268 +
21942591-21942690,21942821-21942904,21943116-21943192,
21943266-21943336,21943646-21943717,21943894-21943965,
21944057-21944122,21944411-21944476,21944553-21944770,
21944983-21945254,21945513-21945778,21945879-21945999,
21946094-21946230,21946362-21946518,21947055-21947189
Length = 637
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = +3
Query: 228 AHFFGQSVGRXFSSSIVSKKPVVNRKDGYFVPPEFGNKLESLPAYSDKLDFKQERDLRMH 407
+H++ GR SS++ K + G PP K S + +KL+ + +
Sbjct: 268 SHYYTDESGRRNSSAVNMKSLEHSPSMGCKTPPAVPRKSMSDNEFENKLNHSRRSTDPIS 327
Query: 408 FMSDLERNIMKATLKFSTNYIMG 476
M+ ++ AT FS+N +G
Sbjct: 328 LMNHSSSDLQAATGNFSSNRQLG 350
>06_03_0905 + 25843547-25844314
Length = 255
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 139 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPL 252
P P+ P PV PPK + P ++ PT + P+
Sbjct: 76 PPPLVAPPKVPVTHPPKGPVTRPPPVTYPTPPVTTPPV 113
>02_01_0791 - 5930553-5930802,5931042-5932351
Length = 519
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 71 VFFERITFLTRQRPVARAVSNLCQRLSPTRRC 166
VF + FLTR RPV V C + P RRC
Sbjct: 89 VFLSTVRFLTRPRPV-YLVDFACYKPPPERRC 119
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 139 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRT 234
P +A P SP PP S PP PT T
Sbjct: 217 PPSIATPPPSPASPPPPSTATPPPPSPTPTTT 248
>08_02_1227 -
25398063-25398302,25398629-25398790,25399019-25399150,
25399909-25399961,25400465-25400942
Length = 354
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 151 ANSPLSPVRQPPKSNIKPPTRISLP 225
A SPL P PP SN +PP S+P
Sbjct: 328 AGSPLHPGIAPPSSNSQPPFLSSMP 352
>06_03_0661 + 23225514-23227073
Length = 519
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 71 VFFERITFLTRQRPVARAVSNLCQRLSPTRRC--RLFVSRQNLTSNHLRASL 220
VF + FLTR RPV + C + P R+C F+ +LT + A+L
Sbjct: 93 VFLSTLYFLTRPRPV-YLLDFACYKPDPQRKCTRETFMRCSSLTGSFTDANL 143
>05_05_0079 +
22239238-22239395,22240837-22240877,22240955-22241033,
22241570-22241656,22241749-22241837,22241933-22242004,
22242094-22242186,22242339-22242427
Length = 235
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 621 CMLWFTSKSRWTILTA*TYAVKNAIYITTFQRPRTK 728
CMLW TS S T+L A A+ + +F+ P K
Sbjct: 154 CMLWLTSCSLLTVLWALLIAIFATLLHASFRTPNLK 189
>04_03_0258 -
13573730-13573816,13573881-13574666,13575043-13575126,
13575254-13575322,13575324-13576228,13576517-13576784
Length = 732
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 578 WCIANRSCAAP*SFCILQNCLQISRHAHIFTVYITH 471
WC+ N SC P ++++CL + H +I +++ H
Sbjct: 687 WCLQNDSCQRPSMSMVVKSCLLKAIHRYIL-LHLLH 721
>03_03_0254 +
15884149-15884295,15884765-15884803,15884958-15885136,
15887175-15887310,15887769-15887865,15888448-15888534,
15888621-15888721,15888905-15888939,15889520-15889577,
15889650-15889724,15890048-15890135,15890155-15890308,
15890395-15890638
Length = 479
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -2
Query: 512 ISRHAHIFTV--YITHNVIGGKF*RGFHDVAF*IAHKMHT*ITLLFEIQF 369
+SR HIF++ +IT+ I + G HD+ + HK+H + +E +F
Sbjct: 127 LSRFKHIFSMNEHITNPNIPIYYLSGNHDIGYSAFHKIHPEVISRYEKEF 176
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 127 VKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 249
VKSLP P +P+S + PP ++ PP +SLP + P
Sbjct: 1261 VKSLPPP---APVS-LPPPPVKSLPPPAPVSLPPPVVKSLP 1297
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 514 CKQFCKIQKDYGAAHERFAMHHLQL 588
C++ +I YG AH+R A H++L
Sbjct: 257 CEEAVRIDPSYGRAHQRLASLHIRL 281
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 118 KGRVK-SLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLDAXSAA 270
KG V ++PT N+P +PV P + N PP ++ P T A P+ AA
Sbjct: 99 KGAVSPAVPTRPQNAP-TPVTPPKEYNAPPPVELTPPAPTHVA-PVAPPQAA 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,725,533
Number of Sequences: 37544
Number of extensions: 489111
Number of successful extensions: 1552
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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