Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120550.Seq
(831 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57) 34 0.16
SB_738| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_47100| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 31 1.5
SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24) 30 2.6
SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 30 2.6
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 3.5
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 3.5
SB_24355| Best HMM Match : SAM_2 (HMM E-Value=3e-07) 29 3.5
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) 29 4.6
SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_36313| Best HMM Match : Crl (HMM E-Value=5.1) 29 6.1
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 28 8.1
SB_9886| Best HMM Match : WD40 (HMM E-Value=1.4) 28 8.1
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032) 28 8.1
>SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)
Length = 818
Score = 33.9 bits (74), Expect = 0.16
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +1
Query: 118 KGRVKSLPTPVANSPLSPVRQP----PKSNIKPPTRISLPTRTFSANPLDAXSAAAL*VK 285
+ R SLP A+SP +P P P SN PP+ +SL R + + +
Sbjct: 676 RARSLSLPCTAASSPSTPASSPSPTPPLSNSLPPSTLSLMLRKKRTSNAFDINNIVIPYS 735
Query: 286 NQSSTEKMDILCRPSLVTNWKV 351
SST + + L NW+V
Sbjct: 736 MASSTRVEKLQYKEILTPNWRV 757
>SB_738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +1
Query: 127 VKSLPT-PVANSPLSPVRQPPKSNI-KPPTR--ISLPTRTFSANPLDAXSAA 270
+ S PT P+ + P SP+ PP + I PPT +S PT + + P ++ +A
Sbjct: 16 IMSPPTNPIMSPPTSPIMSPPTNPIMSPPTNPIMSPPTNSIMSAPTNSIMSA 67
>SB_47100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 664 VRIVQRLFDVNHNIQKPCARVVFESIIASGASRIAHVLLRSLFVFYRTACK 512
V ++Q F + + PCA VV+ + AS A ++ L + + Y+T+ K
Sbjct: 1 VSVLQTRFQIGF-VVIPCASVVYRLLFASNAMAVSRFLAIMVKILYKTSVK 50
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 240 GQSVGRXFSSSIVSKKPVVNRKDGYFVPPEFGNKLESLPAYSD-KLDFKQERDLRMHFMS 416
GQS+ F+S V+ KP V + P F K + +PA + K + +QE ++ H +
Sbjct: 47 GQSLAADFNSLNVNAKPFVPNVNAPSFVPSFLTKPDPVPAQEEAKENVQQEIEVE-HKQN 105
Query: 417 DLERNIMKATL 449
D E +++ L
Sbjct: 106 DQEEEVVEDAL 116
>SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)
Length = 553
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = +1
Query: 37 IFEC*PTVTMNRFFRENNIFDAPKTGGKGRVKSLPTPVANSP----LSPVRQPPKSNIKP 204
+ C P V+ E + P+ K +PT SP +PVR+ P+ KP
Sbjct: 488 VLPCTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRRYPRRTPKP 547
Query: 205 PTRISL 222
R+ L
Sbjct: 548 VVRLDL 553
>SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 858
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 97 DAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLDA 258
D +T G+ V P PL+P PPK+ + P+ + R +P D+
Sbjct: 300 DPGQTQGEEAVPGTPLQKPGGPLAPAESPPKTGTEEPSPKTGEKRPPGLHPTDS 353
>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +2
Query: 539 KTTEQHMSDSRCTTCNYRFKDNTRAWFLYVVVHIEKPLDDSDRIDICCQKC 691
K E + S+CTTCN ++ F Y+ K I C+KC
Sbjct: 208 KKAEPGTTHSKCTTCNGTGQETVNTGFFYMKSTCRKCAGQGYIISTPCRKC 258
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +1
Query: 100 APKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTR-ISLPTRTFSANP 249
AP G R P P N P P+R P PP + P + S+NP
Sbjct: 230 APPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPPKNAPPPPKRGSSNP 280
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +1
Query: 100 APKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTR-ISLPTRTFSANP 249
AP G R P P N P P+R P PP + P + S+NP
Sbjct: 142 APPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPPKNAPPPPKRGSSNP 192
>SB_24355| Best HMM Match : SAM_2 (HMM E-Value=3e-07)
Length = 352
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 103 PKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLDAXSAAAL*V 282
P+T + KS P P+ +SPV++P K PP P N D A+ +
Sbjct: 213 PRTNSSNKKKSAP-PLPKHVVSPVKRPNKVKAPPPIP---PRSDLEVNSQDVPKVASESI 268
Query: 283 KNQSS 297
+++ S
Sbjct: 269 ESKES 273
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Frame = +1
Query: 136 LPTPVANSPLSPVRQPPKSN--------IKPPTRISLPTR 231
LP P+ PL P+R PP + + PP+RI LP++
Sbjct: 1340 LPLPLPRLPLPPLRLPPPHSRLPLPPPKLPPPSRIPLPSK 1379
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 136 LPTPVANSPLSPVRQPPKSNIKPPTRIS 219
LP P + PL P + PP S I P+++S
Sbjct: 1354 LPPPHSRLPLPPPKLPPPSRIPLPSKLS 1381
>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
Length = 240
Score = 29.1 bits (62), Expect = 4.6
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Frame = +1
Query: 61 TMNRFFRENNIFDAPKTGGKG-RVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTF 237
T R + ++ +PKT K R+KSL T SP R PK++ K + S P +
Sbjct: 88 TSRRTSLKRSLKTSPKTSPKTMRMKSLKTSPKTSPEIGPRTSPKTSSKTSPKTS-PKSSP 146
Query: 238 SANPLDAXSAAAL*VKNQSSTEKMDILCRPSLVTNWKVCPRTA 366
+P + + + S R SL + K P+T+
Sbjct: 147 KTSPKTSSKTSLKTSQKTSLNASRKTSRRTSLKRSLKTSPKTS 189
>SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 29.1 bits (62), Expect = 4.6
Identities = 22/82 (26%), Positives = 34/82 (41%)
Frame = +1
Query: 121 GRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLDAXSAAAL*VKNQSST 300
G + P P SPL P + S + P LP S +P+ S + + ST
Sbjct: 180 GLQANTPPPRPASPLPPKKSEQGSELGRPPSKPLPPSPRSKSPMPGQSLSL--PQRSDST 237
Query: 301 EKMDILCRPSLVTNWKVCPRTA 366
E + + RP+ ++ CP A
Sbjct: 238 EGLSV--RPAPYSHLPPCPSAA 257
>SB_36313| Best HMM Match : Crl (HMM E-Value=5.1)
Length = 442
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 127 VKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLDAXSAA 270
++++P P +P SP P S PP R +P + PL++ AA
Sbjct: 121 LETIPAPTPTTPTSPAT--PASG--PPIRTPIPLKETPTQPLESAPAA 164
>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 103 PKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPP 207
P+T + KS P P+ +SPV++P K PP
Sbjct: 213 PRTNSSNKKKSAP-PLPKHVVSPVKRPNKVKAPPP 246
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 139 PTPVANSPLSPVRQPPKSNIKPPTRI-SLPTRTFSANP 249
P P PL P+R+PP PP + S PT + P
Sbjct: 36 PIPHGPRPLPPLREPPTPAPTPPPALPSTPTLPLAPRP 73
>SB_9886| Best HMM Match : WD40 (HMM E-Value=1.4)
Length = 140
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Frame = +2
Query: 440 SHAKIFHQLHYGLYKQ*RYAHDGK-FASSSVKYK-----KTTEQHMSDSRCTTCNYRFKD 601
S A ++ Y L +Y+ DG FAS+S +K T+QH+S + NY F
Sbjct: 60 SKAWYLYRPQYSLLSLLQYSDDGMWFASASDDFKVCVWNMATQQHVSPNMGHEKNYEFSC 119
Query: 602 NTRAW 616
RA+
Sbjct: 120 GVRAY 124
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 133 SLPTPVANSPLSPVRQPPKS 192
SLP P+A+ L P QPPK+
Sbjct: 1496 SLPQPIASKQLEPPPQPPKA 1515
>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
Length = 521
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 100 APKTGGKG-RVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPT 228
+PKT K R+KSL T SP R PK++ K + SL T
Sbjct: 349 SPKTSPKTMRMKSLKTSPKTSPEISPRTSPKTSSKTSPKTSLKT 392
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,448,991
Number of Sequences: 59808
Number of extensions: 580017
Number of successful extensions: 1819
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1809
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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