Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120550.Seq
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    26   0.49 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.65 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         24   1.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.6  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    22   8.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.0  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -1

Query: 105 WRVKNVILSKKTVHCNCWLALKNQHNTVHV 16
           W  KN +        +CWL +   HN + V
Sbjct: 105 WNTKNCVNPYDRDSLSCWLQMTKHHNFIKV 134


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 815 CAPNLQENVLVKNLSLANS*GRPN**KDIFRTRSLERCDIDSI 687
           C P++QE V+ +   +     RP   +D    + LERC ++++
Sbjct: 366 CHPDIQEKVIQELDEIFGDSDRPATFQDTLEMKYLERCLLETL 408


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 133 SLPTPVANSPLSPVRQPPKSNIKPPTRI 216
           S+P  V + P+  +RQ  + NI+P T +
Sbjct: 20  SVPKVVYDGPIYELRQIEEENIEPDTEL 47


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 142 TPVANSPLSPVRQPPKSNIKPPTRISL 222
           TP +++P+SPV  P   ++  P R +L
Sbjct: 436 TPPSSNPVSPVPSPDPLDLAIPVRETL 462


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 704 NVPKTSYEIYPSINLVDLSY*PERGFLPIH 793
           N P       PS +L+DLS  PE   LPI+
Sbjct: 41  NSPDHYERFSPSTHLMDLSSPPEHRDLPIY 70


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 124 RVKSLPTPVANSPLSPVRQPPKSNIKPPTRIS 219
           +V    +P+   P++PV++      +PP R+S
Sbjct: 11  KVDRSTSPLPRKPVNPVQELKALFAEPPVRVS 42


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +1

Query: 532 IQKDYGAAHERFAMHH 579
           ++KD+G   +++ +HH
Sbjct: 10  LKKDFGTYFQQYCLHH 25


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 701 DIDSIFDSICLCGQNRPTAFRCEPQHTKTMRACCL*IYNC 582
           DI++IF    +   N+   ++ + ++ K  R+  L  YNC
Sbjct: 657 DIENIFKYGYVSHANQRNMYKLDLKNMKYTRSADLSSYNC 696


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,161
Number of Sequences: 438
Number of extensions: 5420
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)