Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120549.Seq
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0617 + 22773981-22774216,22774715-22774880                       30   2.3  
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311...    29   5.4  
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245...    28   7.1  
07_03_0155 - 14520957-14521013,14521360-14521400,14521534-145218...    28   9.4  
01_05_0703 - 24404580-24406373                                         28   9.4  

>06_03_0617 + 22773981-22774216,22774715-22774880
          Length = 133

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 475 GPPLQPPVIPLSFSGASYK 531
           GPPL PP +PL+ SGA ++
Sbjct: 7   GPPLLPPSLPLAVSGADHQ 25


>12_02_1221 -
           27130321-27130491,27130616-27130664,27131120-27131188,
           27131845-27131939,27132032-27132121,27132885-27132968,
           27133122-27133211,27133310-27133624,27134184-27134399,
           27134736-27134774,27135337-27135408
          Length = 429

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 530 NITPGCAYTSQFGVLTCCPNGNIGFLANNSDGTV 631
           NI  G   T   G+  CCPN  +  ++N  + TV
Sbjct: 148 NINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTV 181


>10_01_0232 +
           2456449-2456652,2456814-2456897,2459113-2459201,
           2459245-2459452,2459764-2459883,2460004-2460087,
           2460171-2460242,2460342-2460455,2460852-2460952,
           2461024-2461117,2461265-2461432,2461539-2461616,
           2461908-2461973,2462052-2462108,2462353-2462572,
           2462867-2463003,2465379-2465450,2465530-2465577,
           2465681-2465806,2465982-2466047,2466508-2466620,
           2467348-2467432,2467885-2467980,2468067-2468114,
           2468190-2468258,2468393-2468581
          Length = 935

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 689 KNLSELINYVKANPKILAIYSTSS 760
           +N+  LINYV  + ++ A+YST S
Sbjct: 314 RNMDRLINYVNKDGRVHALYSTPS 337


>07_03_0155 -
           14520957-14521013,14521360-14521400,14521534-14521834,
           14522038-14522113,14522235-14522347
          Length = 195

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 447 TPPVKPDHHRAPSTASSHTPELQW 518
           TPP  PD+ ++P   SS +  +QW
Sbjct: 92  TPPSSPDNSKSPVAQSSSSSWIQW 115


>01_05_0703 - 24404580-24406373
          Length = 597

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 581 SKSIPQIGTYMHNRGLCLYEAPLKLRGMTGGCRGGPVMVRLDWRCKLCQLEGSLI 417
           SK+IP+   +MH   L  Y     L    GG RGG   +  +    LC L+G+ +
Sbjct: 502 SKNIPRYWVFMHYASLFKYPFEAFLVNEYGGARGGAECL-AEVGGGLCVLDGATL 555


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,880,704
Number of Sequences: 37544
Number of extensions: 510318
Number of successful extensions: 1333
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)