Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120549.Seq
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)                     29   4.1  
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)                     29   4.1  
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_22310| Best HMM Match : Exo_endo_phos (HMM E-Value=0.12)            29   5.4  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  
SB_178| Best HMM Match : DUF201 (HMM E-Value=3.3)                      28   9.5  

>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 408

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 623 HRSYLQENQCSHWDSKSIPQIGTYMHNRGLCLYEAPLKLRGMTGGCR 483
           ++SYL  N  S+W  KS P   +Y        Y  P + RGMT  CR
Sbjct: 342 YKSYL--NVLSYWPYKSYPNALSYWP------YTRPSQTRGMTSSCR 380


>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 392

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 623 HRSYLQENQCSHWDSKSIPQIGTYMHNRGLCLYEAPLKLRGMTGGCR 483
           ++SYL  N  S+W  KS P   +Y        Y  P + RGMT  CR
Sbjct: 326 YKSYL--NVLSYWPYKSYPNALSYWP------YTRPSQTRGMTSSCR 364


>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2286

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 25/93 (26%), Positives = 32/93 (34%)
 Frame = +1

Query: 13   WTQLEDPLDERILNTLKAISILSGDTRGDLSGKYKHLVRISGDDMPQXXXXXXXXXXXGP 192
            W   ED L  RI  T + +   S   R    G+   L   SG  +             G 
Sbjct: 1545 WAAKEDALRSRITRTAETLKEHSRPLRPLAVGERVFLQSSSGVVVESPGHDQYRVKVDGS 1604

Query: 193  KTLIATLRMAITAYTAALARKPSPPSQILLPHQ 291
              L    R  + AYT A +    PP+    PHQ
Sbjct: 1605 GLLTLRNRRFLRAYTPASSDIKPPPAVATPPHQ 1637


>SB_22310| Best HMM Match : Exo_endo_phos (HMM E-Value=0.12)
          Length = 633

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/53 (20%), Positives = 25/53 (47%)
 Frame = +1

Query: 190 PKTLIATLRMAITAYTAALARKPSPPSQILLPHQQI*WSSLR*YSPSRNLSNH 348
           P+T +  +    +++    A  P+ P  + +P     W +L+ ++  RN  N+
Sbjct: 96  PQTYLVPIFRKSSSFKGESAMVPNEPPDVAIPFPNACWEALKYHATERNAENY 148


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -3

Query: 718  DIIDQLRQVLIEDRRERAWLPNYFHKFGYHSAI-GVICKKTNVPIGTASQYPKLGRIC-T 545
            D +    Q          WLP +FH   + +A+     +  NVP+ + +   K+ + C T
Sbjct: 3879 DSVTPSAQAFARQHPRAYWLPAFFHPQAFLTAVLQTHSRMRNVPLDSLAFEYKVRKACWT 3938

Query: 544  TGGYVYMKP 518
            T   VY +P
Sbjct: 3939 TEEVVYGEP 3947


>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 42  ENSQYLESDQHPERRHQR-RSEWKI*TSSPH*RR*HAPIIGRTSRH 176
           E S++ ES++H   RH+R R E     SSPH    H      TSRH
Sbjct: 20  ERSRH-ESNRHKTSRHERSRHETSRHESSPHETSRHETSRHETSRH 64


>SB_178| Best HMM Match : DUF201 (HMM E-Value=3.3)
          Length = 847

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 665 VASELLPQVWLSQCHRSYLQENQCSHWDSKSIPQIG 558
           V +E++P+V  + C + YL  N  +HW   S   IG
Sbjct: 661 VVTEVIPEVTGNYCVQFYLHRNGDTHWVGVSRQIIG 696


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,762,800
Number of Sequences: 59808
Number of extensions: 577075
Number of successful extensions: 1216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)