Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120549.Seq
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26280.1 68418.m03137 meprin and TRAF homology domain-contain...    30   1.5  
At4g22756.1 68417.m03285 sterol desaturase family protein simila...    30   1.5  
At1g04890.1 68414.m00486 hypothetical protein contains Pfam prof...    29   2.6  
At4g02440.1 68417.m00331 F-box family protein  to circadian cloc...    29   4.5  
At1g67500.1 68414.m07688 DNA polymerase family B protein similar...    29   4.5  
At1g08280.1 68414.m00914 glycosyl transferase family 29 protein ...    29   4.5  
At4g39860.2 68417.m05648 expressed protein                             28   7.8  
At4g39860.1 68417.m05647 expressed protein                             28   7.8  
At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containi...    28   7.8  

>At5g26280.1 68418.m03137 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 350

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = -1

Query: 705 SSDRFLLRTVVRGRGFRITST-SLA--ITVPSELFARKPMFPLGQQVNTPNWDVYAQPGV 535
           SS  F+++ V +GRG    S+ SL   + V  EL   +P   +   V   ++ V    G 
Sbjct: 21  SSAEFIIQQVTKGRGIEYNSSYSLEENLGVTRELREERPSSKI---VTITSFSVIKGRGE 77

Query: 534 MFI*SPTEAQGYDWRL 487
            +  S  EA GY WRL
Sbjct: 78  PYESSVFEAAGYKWRL 93


>At4g22756.1 68417.m03285 sterol desaturase family protein similar
           to sterol 4-alpha-methyl-oxidase GI:16973471 from
           [Arabidopsis thaliana]; contains Pfam profile PF01598:
           Sterol desaturase
          Length = 299

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -3

Query: 724 CLDIIDQLRQVLIEDRRERAWLPNYFH-KFGYHSAIGVICKKTNVPIGTASQYPKLGRIC 548
           C++I+ QL    + +     W+  +FH K+GY      I  +   PIG A+ Y     + 
Sbjct: 125 CMEIVAQLVVYFLVEDYTNYWVHRFFHCKWGYEK-FHHIHHEYTAPIGYAAPYAHWAEVL 183

Query: 547 TTGGYVYMKP 518
             G   ++ P
Sbjct: 184 LLGIPTFLGP 193


>At1g04890.1 68414.m00486 hypothetical protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 494

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 457 TGGVSCVNLRVLLSSSAV*AVIPLATLFQA*ERCSNDDWKD 335
           +G V+C +LR + SS A         +    E CSNDD KD
Sbjct: 112 SGRVNCASLRSISSSEAFDETAKTNLMQPYDETCSNDDQKD 152


>At4g02440.1 68417.m00331 F-box family protein  to circadian clock
           coupling factor ZGT (GP|14210079) {Nicotiana tabacum};
           contains Pfam PF00646: F-box domain
          Length = 336

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +2

Query: 509 ASVGLHINITPGCAYTSQFGVLTCCPN-GNIGFLANNSDGTVIAKL-VEVIRKPRPLTTV 682
           +S     ++TP   + S + +  CCP   + G L  NSD  +  +L  +    P+P TT 
Sbjct: 75  SSTAADSSLTPPGGWASLYKLAVCCPGLFHAGILLENSDFGLERELGPDQNLDPKPTTTD 134

Query: 683 LNKNLSELINYVKANPKILAIYS 751
           L  N  E+   V +  +  + +S
Sbjct: 135 LALNDEEVSKPVGSGLETTSFWS 157


>At1g67500.1 68414.m07688 DNA polymerase family B protein similar to
            SP|Q61493 DNA polymerase zeta catalytic subunit (EC
            2.7.7.7) {Mus musculus}; contains Pfam profile PF00136:
            DNA polymerase family B
          Length = 1890

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 590  GNIGFLANNSDGTVIAKLVEVIRKPRPLTTVLNKNLSELINYVKANPKI 736
            G+IGFLA  +    I  L  + R P P TT  + N  +L N +  +P +
Sbjct: 1130 GSIGFLAERAAQLGIRFLNNISRTPSPTTTNNSDNKRKLGNNLLPDPLV 1178


>At1g08280.1 68414.m00914 glycosyl transferase family 29 protein /
           sialyltransferase family protein contains Pfam profile:
           PF00777 sialyltransferase (Glycosyltransferase family
           29)
          Length = 398

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/71 (30%), Positives = 28/71 (39%)
 Frame = +2

Query: 527 INITPGCAYTSQFGVLTCCPNGNIGFLANNSDGTVIAKLVEVIRKPRPLTTVLNKNLSEL 706
           I++  G    S    L+C   GN G L N+  G +I K   VIR     T    K +   
Sbjct: 160 IDVHNGVVSISSERYLSCAVVGNSGTLLNSQYGDLIDKHEIVIRLNNAKTERFEKKVGSK 219

Query: 707 INYVKANPKIL 739
            N    N  IL
Sbjct: 220 TNISFINSNIL 230


>At4g39860.2 68417.m05648 expressed protein
          Length = 298

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 447 TPPVKPDHHRAPSTASSHTP 506
           TPP  P HH  PS A SH P
Sbjct: 23  TPP--PPHHSTPSAARSHQP 40


>At4g39860.1 68417.m05647 expressed protein
          Length = 299

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 447 TPPVKPDHHRAPSTASSHTP 506
           TPP  P HH  PS A SH P
Sbjct: 23  TPP--PPHHSTPSAARSHQP 40


>At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containing
            protein contains Pfam profile PF00515: TPR Domain
          Length = 1311

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +2

Query: 527  INITPGCAYTSQFGV---LTCCPNGNIGFLANNSDGTVIAKLVEVIRKPRPLTTVLNKNL 697
            I +T    Y  +  V   L+CC   +  F+  N D T+ + ++E      P+T      L
Sbjct: 1054 IKVTESLCYQKEETVKLDLSCCGLASSFFIKLNQDVTLTSSILEFNVGGNPITEEGISAL 1113

Query: 698  SELINYVKANPKILAI 745
             EL+    +N K+L +
Sbjct: 1114 GELLRNPCSNIKVLIL 1129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,345,393
Number of Sequences: 28952
Number of extensions: 397457
Number of successful extensions: 937
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)